Evidence map›Paper›PMID 29067460›Full record

ArticleMolecular medicine reports2017

STRA6 as a possible candidate gene for pathogenesis of osteoporosis from RNA‑seq analysis of human mesenchymal stem cells.

Insun Song, Yong Jun Choi, Yilan Jin, Jung-Woo Kim, Jeong-Tae Koh, Hyung Min Ji, Seon-Yong Jeong, Ye-Yeon Won, Won Kim, Yoon-Sok Chung

Open access · hybridAbstract read
In one paragraph

Article in Molecular medicine reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.1field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
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  5. Review
  6. IMPC-based screening revealed thatFrontiers in cell and developmental biology · 2024
    Article
  7. Vitamin A and Bone Health: A Review on Current Evidence.Molecules (Basel, Switzerland) · 2021
    Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Insun SongSchool of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea.
Yong Jun ChoiDepartment of Endocrinology and Metabolism, Ajou University School of Medicine, Suwon 16499, Republic of Korea.
Yilan JinDepartment of Endocrinology and Metabolism, Ajou University School of Medicine, Suwon 16499, Republic of Korea.
Jung-Woo KimDepartment of Pharmacology and Dental Therapeutics, School of Dentistry, Chonnam National University, Gwangju 61186, Republic of Korea.
Jeong-Tae KohDepartment of Pharmacology and Dental Therapeutics, School of Dentistry, Chonnam National University, Gwangju 61186, Republic of Korea.
Hyung Min JiDepartment of Orthopedic Surgery, Ajou University School of Medicine, Suwon 16499, Republic of Korea.
Seon-Yong JeongDepartment of Medical Genetics, Ajou University School of Medicine, Suwon 16499, Republic of Korea.
Ye-Yeon WonDepartment of Orthopedic Surgery, Ajou University School of Medicine, Suwon 16499, Republic of Korea.
Won KimSchool of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea.
Yoon-Sok ChungDepartment of Endocrinology and Metabolism, Ajou University School of Medicine, Suwon 16499, Republic of Korea.
Ajou University · KRChonnam National University · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To identify novel candidate genes associated with osteoporosis, RNA‑sequence analysis of human mesenchymal stem cells (hMSCs) from patients with osteoporosis (G3) and osteopenia (G2), and healthy controls (G1) was performed. Differentially expressed genes (DEGs) from among the three groups were identified. DEGs were separated into nine groups according to their gene expression patterns: UU (up and up), UF (up and flat), UD (up and down), FU (flat and up), FF (flat and flat), FD (flat and down), DU (down and up), DF (down and flat), and DD (down and down). Among the 42 DEGs between G3 and G1, eight candidate genes, namely stimulated by retinoic acid 6 (STRA6), melanophilin, neurotrophic receptor tyrosine kinase 2, cartilage oligomeric matrix protein, collagen type XI α 1 chain, integrin subunit β 2, monooxygenase DBH‑like 1 and selenoprotein P, were selected, as they demonstrated consistent gene expression patterns of UU, FU, FD, and DD. Among these eight genes, STRA6 was highly expressed in the osteoporosis group and based on additional data from quantitative polymerase chain reaction analysis, it was selected for further study. In order to investigate whether STRA6 served a functional role in osteoblast or adipocyte differentiation, the effects of STRA6 expression changes in pluripotent stem cell C3H10T1/2, preosteoblast MC3T3‑E1 and stromal ST2 cell lines were examined. Bone morphogenetic protein 2 enhanced STRA6 expression only at the early stage of osteoblast differe-ntiation, and overexpression of STRA6 temporally inhibited the expression of osteoblastogenesis markers, including runt related transcription factor 2, bone sialoprotein and osteocalcin. Furthermore, the knockdown of STRA6 slightly enhanced nodule formation at the late stage of osteoblast differentiation, and overexpression of STRA6 in ST2 cells enhanced adipocyte differentiation. Taken together, STRA6 expression could be associated with the pathogenesis of osteoporosis by promoting adipocyte differentiation over osteoblast differentiation in the hMSC population.

Indexed as

Adaptor Proteins, Signal TransducingAgedAnimalsBone Diseases, MetabolicBone Marrow CellsCell DifferentiationCells, CulturedFemaleGene Expression RegulationHumansMaleMembrane GlycoproteinsMembrane ProteinsMesenchymal Stem CellsMiceMiddle AgedAdaptor Proteins, Signal TransducingMembrane GlycoproteinsMembrane ProteinsMLPH protein, humanOsteocalcinReceptor, trkBRNASTRA6 protein, humantropomyosin-related kinase-B, human

Identifiers

PMID29067460
PMCPMC5646996
OpenAlexW2739267015

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.