Evidence map›Paper›PMID 29066854›Full record

ArticleJournal of human genetics2017

2SNP heritability and effects of genetic variants for neutrophil-to-lymphocyte and platelet-to-lymphocyte ratio.

Bochao Danae Lin, Elena Carnero-Montoro, Jordana T Bell, Dorret I Boomsma, Eco J de Geus, Rick Jansen, Cornelis Kluft, Massimo Mangino, Brenda Penninx, Tim D Spector and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Bochao Danae LinDepartment of Biological Psychology, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Elena Carnero-MontoroDepartment of Twin Research and Genetic Epidemiology, Kings College London, London, UK.
Jordana T BellDepartment of Twin Research and Genetic Epidemiology, Kings College London, London, UK.
Dorret I BoomsmaDepartment of Biological Psychology, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Eco J de GeusDepartment of Biological Psychology, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Rick JansenDepartment of Psychiatry, VU Medical Center, Amsterdam, The Netherlands.
Cornelis KluftGood Biomarker Sciences, Leiden, The Netherlands.
Massimo ManginoDepartment of Twin Research and Genetic Epidemiology, Kings College London, London, UK.ORCID http://orcid.org/0000-0002-2167-7470
Brenda PenninxDepartment of Psychiatry, VU Medical Center, Amsterdam, The Netherlands.
Tim D SpectorDepartment of Twin Research and Genetic Epidemiology, Kings College London, London, UK.
Gonneke WillemsenDepartment of Biological Psychology, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Jouke-Jan HottengaDepartment of Biological Psychology, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-5668-2368
King's College London · GBVrije Universiteit Amsterdam · NLAmsterdam Public Health · NLAmsterdam UMC Location Vrije Universiteit Amsterdam · NLGBS Leiden · NL

Funding

Integration of Genomics & Transcriptomics in Normal Twins & Major DepressionRC2MH089951 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SULLIVAN, PATRICK F · 2009 to 2010
$6.5M
European Research Council 230374NIMH NIH HHS RC2 MH089951Wellcome Trust 099194Wellcome Trust 105022
6 · The paper itself

Abstract

Neutrophil-to-lymphocyte ratio (NLR) and platelet-to-lymphocyte ratio (PLR) are important biomarkers for disease development and progression. To gain insight into the genetic causes of variance in NLR and PLR in the general population, we conducted genome-wide association (GWA) analyses and estimated SNP heritability in a sample of 5901 related healthy Dutch individuals. GWA analyses identified a new genome-wide significant locus on the HBS1L-MYB intergenic region for PLR, which replicated in a sample of 2538 British twins. For platelet count, we replicated three known genome-wide significant loci in our cohort (at CCDC71L-PIK3CG, BAK1 and ARHGEF3). For neutrophil count, we replicated the PSMD3 locus. For the identified top SNPs, we found significant cis and trans expression quantitative trait loci effects for several loci involved in hematological and immunological pathways. Linkage Disequilibrium score (LD) regression analyses for PLR and NLR confirmed that both traits are heritable, with a polygenetic SNP heritability for PLR of 14.1%, and for NLR of 2.4%. Genetic correlations were present between ratios and the constituent counts, with the genetic correlation (r=0.45) of PLR with platelet count reaching statistical significance. In conclusion, we established that two important biomarkers have a significant heritable SNP component, and identified the first genome-wide locus for PLR.

Indexed as

Blood PlateletsGenome-Wide Association Studybcl-2 Homologous Antagonist-Killer ProteinBiomarkersClass Ib Phosphatidylinositol 3-KinaseCohort StudiesFemaleGTP-Binding ProteinsHSP70 Heat-Shock ProteinsHumansLinkage DisequilibriumLymphocytesMaleNeutrophilsPeptide Elongation FactorsPlatelet CountARHGEF3 protein, humanBAK1 protein, humanbcl-2 Homologous Antagonist-Killer ProteinBiomarkersClass Ib Phosphatidylinositol 3-KinaseGTP-Binding ProteinsHBS1L protein, humanHSP70 Heat-Shock ProteinsPeptide Elongation FactorsPIK3CG protein, humanproteasome activator PA700 subunit p58, humanProteasome Endopeptidase ComplexRho Guanine Nucleotide Exchange Factors

Identifiers

PMID29066854
PMCPMC5669488
OpenAlexW2745000688

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.