Evidence map›Paper›PMID 29065921›Full record

ArticleMolecular neurodegeneration2017

Fibroblast bioenergetics to classify amyotrophic lateral sclerosis patients.

Csaba Konrad, Hibiki Kawamata, Kirsten G Bredvik, Andrea J Arreguin, Steven A Cajamarca, Jonathan C Hupf, John M Ravits, Timothy M Miller, Nicholas J Maragakis, Chadwick M Hales and 4 more

Open access · goldAbstract read
In one paragraph

Article in Molecular neurodegeneration, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

  1. Pooled it
  2. International journal of molecular sciences · 2021
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  5. ACS omega · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Csaba KonradFeil Family Brain and Mind Research Institute, Weill Cornell Medicine, 407 East 61st Street, RR507, New York, NY, 10065, USA.
Hibiki KawamataFeil Family Brain and Mind Research Institute, Weill Cornell Medicine, 407 East 61st Street, RR507, New York, NY, 10065, USA.
Kirsten G BredvikFeil Family Brain and Mind Research Institute, Weill Cornell Medicine, 407 East 61st Street, RR507, New York, NY, 10065, USA.
Andrea J ArreguinFeil Family Brain and Mind Research Institute, Weill Cornell Medicine, 407 East 61st Street, RR507, New York, NY, 10065, USA.
Steven A CajamarcaFeil Family Brain and Mind Research Institute, Weill Cornell Medicine, 407 East 61st Street, RR507, New York, NY, 10065, USA.
Jonathan C HupfDepartment of Neurology, Columbia University, New York, NY, USA.
John M RavitsDepartment of Neuroscience, University of California San Diego, La Jolla, CA, USA.
Timothy M MillerDepartment of Neurology, Washington University School of Medicine, St. Louis, MO, USA.
Nicholas J MaragakisDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Chadwick M HalesDepartment of Neurology, Emory School of Medicine, Atlanta, GA, USA.
Jonathan D GlassDepartment of Neurology, Emory School of Medicine, Atlanta, GA, USA.
Steven GrossDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Hiroshi MitsumotoDepartment of Neurology, Columbia University, New York, NY, USA.
Giovanni ManfrediFeil Family Brain and Mind Research Institute, Weill Cornell Medicine, 407 East 61st Street, RR507, New York, NY, 10065, USA. gim2004@med.cornell.edu.ORCID 0000-0003-3893-1348
Cornell University · USColumbia University · USEmory University · USJohns Hopkins University · USUniversity of California San Diego · USWashington University in St. Louis · US

Funding

Mitochondria quality control in SOD1-ALSR01NS062055 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI MANFREDI, GIOVANNI · 2009 to 2019
$3.7M
Metabolic profiling of sporadic ALS patients: from fibroblasts to neurons and backR01NS093872 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI GROSS, STEVEN S, MANFREDI, GIOVANNI · 2015 to 2019
$2.7M
Investigating RNA splicing factor aggregations in Alzheimer's disease and CTEK08NS087121 · NINDS · EMORY UNIVERSITY · PI HALES, CHADWICK M · 2014 to 2018
$858k
SOCIAL RELATIONS, AGING, AND CARDIOVASCULAR CHANGESR55AG013968 · NIA · UNIVERSITY OF UTAH · PI UCHINO, BERT N. · 1996 to 1996
–
NIA NIH HHS R55 AG013968NINDS NIH HHS K08 NS087121NINDS NIH HHS R01 NS062055NINDS NIH HHS R01 NS093872
6 · The paper itself

Abstract

backgroundThe objective of this study was to investigate cellular bioenergetics in primary skin fibroblasts derived from patients with amyotrophic lateral sclerosis (ALS) and to determine if they can be used as classifiers for patient stratification.

methodsWe assembled a collection of unprecedented size of fibroblasts from patients with sporadic ALS (sALS, n = 171), primary lateral sclerosis (PLS, n = 34), ALS/PLS with C9orf72 mutations (n = 13), and healthy controls (n = 91). In search for novel ALS classifiers, we performed extensive studies of fibroblast bioenergetics, including mitochondrial membrane potential, respiration, glycolysis, and ATP content. Next, we developed a machine learning approach to determine whether fibroblast bioenergetic features could be used to stratify patients.

resultsCompared to controls, sALS and PLS fibroblasts had higher average mitochondrial membrane potential, respiration, and glycolysis, suggesting that they were in a hypermetabolic state. Only membrane potential was elevated in C9Orf72 lines. ATP steady state levels did not correlate with respiration and glycolysis in sALS and PLS lines. Based on bioenergetic profiles, a support vector machine (SVM) was trained to classify sALS and PLS with 99% specificity and 70% sensitivity.

conclusionssALS, PLS, and C9Orf72 fibroblasts share hypermetabolic features, while presenting differences of bioenergetics. The absence of correlation between energy metabolism activation and ATP levels in sALS and PLS fibroblasts suggests that in these cells hypermetabolism is a mechanism to adapt to energy dissipation. Results from SVM support the use of metabolic characteristics of ALS fibroblasts and multivariate analysis to develop classifiers for patient stratification.

Indexed as

AdultAgedAged, 80 and overAmyotrophic Lateral SclerosisEnergy MetabolismFemaleFibroblastsHumansMachine LearningMaleMiddle AgedSkinALSBioenergeticsFibroblastsMachine learningMitochondriaPLS

Identifiers

PMID29065921
PMCPMC5655870
OpenAlexW2766700447

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.