Evidence map›Paper›PMID 29065523›Full record

ArticleGenes2017

The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes.

Etienne G J Danchin, Laetitia Perfus-Barbeoch, Corinne Rancurel, Peter Thorpe, Martine Da Rocha, Simon Bajew, Roy Neilson, Elena Sokolova Guzeeva, Corinne Da Silva, Julie Guy and 5 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Pathogenicity ofHelminthologia · 2021
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  9. Functional Variation of Two Novel Cellulases,International journal of molecular sciences · 2018
    Article
  10. Article
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  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 4 countries.

Etienne G J DanchinINRA, Université Côte d'Azur, CNRS, ISA, 06903, Sophia Antipolis Cedex, France. etienne.danchin@sophia.inra.fr.
Laetitia Perfus-BarbeochINRA, Université Côte d'Azur, CNRS, ISA, 06903, Sophia Antipolis Cedex, France. laetitia.zurletto@sophia.inra.fr.
Corinne RancurelINRA, Université Côte d'Azur, CNRS, ISA, 06903, Sophia Antipolis Cedex, France. Corinne.Rancurel@sophia.inra.fr.
Peter ThorpeCell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK. Peter.Thorpe@hutton.ac.uk.
Martine Da RochaINRA, Université Côte d'Azur, CNRS, ISA, 06903, Sophia Antipolis Cedex, France. martine.darocha@sophia.inra.fr.
Simon BajewCell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK. simon.bajew@crg.eu.
Roy NeilsonEcological Sciences Group, IPM@Hutton, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK. Roy.Neilson@hutton.ac.uk.
Elena Sokolova GuzeevaCell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK. Daniel.Esmenjaud@sophia.inra.fr.
Corinne Da SilvaCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, 92057, Evry, France. dasilva@genoscope.cns.fr.
Julie GuyCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, 92057, Evry, France. jguy@genoscope.cns.fr.
Karine LabadieCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, 92057, Evry, France. klabadie@genoscope.cns.fr.
Daniel EsmenjaudINRA, Université Côte d'Azur, CNRS, ISA, 06903, Sophia Antipolis Cedex, France. guzeyeva@mail.ru.
Johannes HelderLaboratory of Nematology, Department of Plant Sciences, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands. John.Jones@hutton.ac.uk.
John T JonesCell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK. Hans.Helder@wur.nl.
Sebastian Eves-van den AkkerBiological Chemistry, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK. s.evesvandenakker@dundee.ac.uk.
James Hutton Institute · GBUniversité Côte d'Azur · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRCentre National de la Recherche Scientifique · FRGenoscope · FRNorwich Research Park · GBWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nematodes have evolved the ability to parasitize plants on at least four independent occasions, with plant parasites present in Clades 1, 2, 10 and 12 of the phylum. In the case of Clades 10 and 12, horizontal gene transfer of plant cell wall degrading enzymes from bacteria and fungi has been implicated in the evolution of plant parasitism. We have used ribonucleic acid sequencing (RNAseq) to generate reference transcriptomes for two economically important nematode species,

Indexed as

glycoside hydrolasehorizontal gene transfernematodesplant parasitism

Identifiers

PMID29065523
PMCPMC5664137
OpenAlexW2767190906

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.