Evidence map›Paper›PMID 29065131›Full record

ArticlePloS one2017

Kinetic characterization of Vibrio cholerae ApbE: Substrate specificity and regulatory mechanisms.

Xuan Fang, Pingdong Liang, Daniel Alexander Raba, Mónica Rosas-Lemus, Srinivas Chakravarthy, Karina Tuz, Oscar Juárez

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Flavin transferase ApbE: From discovery to applications.The Journal of biological chemistry · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Conserved residue His-257 ofThe Journal of biological chemistry · 2019
    Article
  7. Is there a Function for a Sex Pheromone Precursor?Journal of integrative bioinformatics · 2019
    Article
  8. Article
  9. Characterization of theThe Journal of biological chemistry · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xuan FangDepartment of Biological Sciences, Illinois Institute of Technology, Chicago, Illinois, United States of America.
Pingdong LiangDepartment of Biological Sciences, Illinois Institute of Technology, Chicago, Illinois, United States of America.
Daniel Alexander RabaDepartment of Biological Sciences, Illinois Institute of Technology, Chicago, Illinois, United States of America.
Mónica Rosas-LemusDepartment of Biological Sciences, Illinois Institute of Technology, Chicago, Illinois, United States of America.
Srinivas ChakravarthyDepartment of Biological Sciences, Illinois Institute of Technology, Chicago, Illinois, United States of America.
Karina TuzDepartment of Biological Sciences, Illinois Institute of Technology, Chicago, Illinois, United States of America.
Oscar JuárezDepartment of Biological Sciences, Illinois Institute of Technology, Chicago, Illinois, United States of America.ORCID http://orcid.org/0000-0002-2915-8413
Illinois Institute of Technology · USArgonne National Laboratory · US

Funding

Time resolved SAXS studies on the RP2/Arl3 complex pp.484-485P41GM103622 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2012 to 2020
$11.9M
Advanced Pixel Array Detector for Time-Resolved SAXS and Fiber DiffractionS10OD018090 · OD · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2014 to 2014
$529k
NIGMS NIH HHS P41 GM103622NIH HHS S10 OD018090
6 · The paper itself

Abstract

ApbE is a member of a novel family of flavin transferases that incorporates flavin mononucleotide (FMN) to subunits of diverse respiratory complexes, which fulfill important homeostatic functions. In this work a detailed characterization of Vibrio cholerae ApbE physiologic activity, substrate specificity and pH dependency was carried out. The data obtained show novel characteristics of the regulation and function of this family. For instance, our experiments indicate that divalent cations are essential for ApbE function, and that the selectivity depends largely on size and the coordination sphere of the cation. Our data also show that ApbE regulation by pH, ADP and potassium is an important mechanism that enhances the adaptation, survival and colonization of V. cholerae in the small intestine. Moreover, studies of the pH-dependency of the activity show that the reaction is favored under alkaline conditions, with a pKa of 8.4. These studies, together with sequence and structure analysis allowed us to identify His257, which is absolutely conserved in the family, as a candidate for the residue whose deprotonation controls the activity. Remarkably, the mutant H257G abolished the flavin transfer activity, strongly indicating that this residue plays an important role in the catalytic mechanism of ApbE.

Indexed as

Bacterial ProteinsCations, DivalentCations, MonovalentHydrogen-Ion ConcentrationKineticsSubstrate SpecificityVibrio choleraeBacterial ProteinsCations, DivalentCations, Monovalent

Identifiers

PMID29065131
PMCPMC5655446
OpenAlexW2765681348

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.