Evidence map›Paper›PMID 29064494›Full record

ArticleNature chemistry2017

Synthesis facilitates an understanding of the structural basis for translation inhibition by the lissoclimides.

Zef A Könst, Anne R Szklarski, Simone Pellegrino, Sharon E Michalak, Mélanie Meyer, Camila Zanette, Regina Cencic, Sangkil Nam, Vamsee K Voora, David A Horne and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 46 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Zef A KönstDepartment of Chemistry, University of California, 1102 Natural Sciences II, Irvine, California 92697-2025, USA.
Anne R SzklarskiDepartment of Chemistry, University of California, 1102 Natural Sciences II, Irvine, California 92697-2025, USA.
Simone PellegrinoInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France.
Sharon E MichalakDepartment of Chemistry, University of California, 1102 Natural Sciences II, Irvine, California 92697-2025, USA.
Mélanie MeyerInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France.
Camila ZanetteDepartment of Pharmaceutical Sciences, University of California, Irvine, California 91010 92697, USA.ORCID 0000-0003-1411-0086
Regina CencicDepartment of Biochemistry, McGill University, Montréal, Québec H3G 1Y6, Canada.
Sangkil NamDepartment of Molecular Medicine, Beckman Research Institute, City of Hope Comprehensive Cancer Center, 1500 East Duarte Road, Duarte, California 91010, USA.
Vamsee K VooraDepartment of Chemistry, University of California, 1102 Natural Sciences II, Irvine, California 92697-2025, USA.
David A HorneDepartment of Molecular Medicine, Beckman Research Institute, City of Hope Comprehensive Cancer Center, 1500 East Duarte Road, Duarte, California 91010, USA.
Jerry PelletierDepartment of Biochemistry, McGill University, Montréal, Québec H3G 1Y6, Canada.
David L MobleyDepartment of Pharmaceutical Sciences, University of California, Irvine, California 91010 92697, USA.
Gulnara YusupovaInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France.
Marat YusupovInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France.
Christopher D VanderwalDepartment of Chemistry, University of California, 1102 Natural Sciences II, Irvine, California 92697-2025, USA.
University of California, Irvine · USCentre National de la Recherche Scientifique · FRCity of Hope · USMcGill University · CA

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Computational alchemy for molecular design and optimizationR01GM108889 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOBLEY, DAVID LOWELL · 2014 to 2022
$2.5M
Structural Elucidation, Synthesis and Study of the ChlorosulfolipidsR01GM086483 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI VANDERWAL, CHRISTOPHER D · 2010 to 2014
$1.4M
European Research Council 294312NCI NIH HHS P30 CA033572NIGMS NIH HHS R01 GM086483NIGMS NIH HHS R01 GM108889
6 · The paper itself

Abstract

The lissoclimides are unusual succinimide-containing labdane diterpenoids that were reported to be potent cytotoxins. Our short semisynthesis and analogue-oriented synthesis approaches provide a series of lissoclimide natural products and analogues that expand the structure-activity relationships (SARs) in this family. The semisynthesis approach yielded significant quantities of chlorolissoclimide (CL) to permit an evaluation against the National Cancer Institute's 60-cell line panel and allowed us to obtain an X-ray co-crystal structure of the synthetic secondary metabolite with the eukaryotic 80S ribosome. Although it shares a binding site with other imide-based natural product translation inhibitors, CL engages in a particularly interesting and novel face-on halogen-π interaction between the ligand's alkyl chloride and a guanine residue. Our analogue-oriented synthesis provides many more lissoclimide compounds, which were tested against aggressive human cancer cell lines and for protein synthesis inhibitory activity. Finally, computational modelling was used to explain the SARs of certain key compounds and set the stage for the structure-guided design of better translation inhibitors.

Indexed as

AnimalsAntineoplastic Agents, PhytogenicBiological ProductsCell Line, TumorCell ProliferationCrystallography, X-RayDiterpenesDrug Screening Assays, AntitumorEukaryotic Initiation FactorsHumansMiceModels, MolecularMolecular ConformationPeptides, CyclicProtein BiosynthesisSuccinimidesAntineoplastic Agents, PhytogenicBiological ProductschlorolissoclimideDiterpenesEukaryotic Initiation Factorslissoclinamide 7lissoclinamide 8Peptides, CyclicSuccinimides

Identifiers

PMID29064494
PMCPMC6021127
OpenAlexW2726988528

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.