Evidence map›Paper›PMID 29064479›Full record

ArticleThe ISME journal2018

Recurrent patterns of microdiversity in a temperate coastal marine environment.

Meghan Chafee, Antonio Fernàndez-Guerra, Pier Luigi Buttigieg, Gunnar Gerdts, A Murat Eren, Hanno Teeling, Rudolf I Amann

Abstract read
In one paragraph

Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

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  18. Dual thermal ecotypes coexist within a nearly genetically identical population of the unicellular marine cyanobacteriumProceedings of the National Academy of Sciences of the United States of America · 2023
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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Meghan ChafeeMax Planck Institute for Marine Microbiology, Bremen, Germany.
Antonio Fernàndez-GuerraMax Planck Institute for Marine Microbiology, Bremen, Germany.
Pier Luigi ButtigiegHGF-MPG Bridge-Group for Deep Sea Ecology and Technology, Alfred-Wegener Institute, Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, Germany.ORCID 0000-0002-4366-3088
Gunnar GerdtsAlfred-Wegener Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Biologische Anstalt Helgoland, Helgoland, Germany.
A Murat ErenUniversity of Chicago, Department of Medicine, Knapp Center for Biomedical Discovery, Chicago, IL, USA.
Hanno TeelingMax Planck Institute for Marine Microbiology, Bremen, Germany.
Rudolf I AmannMax Planck Institute for Marine Microbiology, Bremen, Germany.

Funding

European Research Council 294757
6 · The paper itself

Abstract

Temperate coastal marine environments are replete with complex biotic and abiotic interactions that are amplified during spring and summer phytoplankton blooms. During these events, heterotrophic bacterioplankton respond to successional releases of dissolved organic matter as algal cells are lysed. Annual seasonal shifts in the community composition of free-living bacterioplankton follow broadly predictable patterns, but whether similar communities respond each year to bloom disturbance events remains unknown owing to a lack of data sets, employing high-frequency sampling over multiple years. We capture the fine-scale microdiversity of these events with weekly sampling using a high-resolution method to discriminate 16S ribosomal RNA gene amplicons that are >99% identical. Furthermore, we used 2 complete years of data to facilitate identification of recurrent sub-networks of co-varying microbes. We demonstrate that despite inter-annual variation in phytoplankton blooms and despite the dynamism of a coastal-oceanic transition zone, patterns of microdiversity are recurrent during both bloom and non-bloom conditions. Sub-networks of co-occurring microbes identified reveal that correlation structures between community members appear quite stable in a seasonally driven response to oligotrophic and eutrophic conditions.

Indexed as

BiodiversityBacteriaEutrophicationPhytoplanktonRNA, Ribosomal, 16SSeasonsSeawaterRNA, Ribosomal, 16S

Identifiers

PMID29064479
PMCPMC5739018

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.