Evidence map›Paper›PMID 29063830›Full record

ArticleeLife2017

Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism.

William Putzbach, Quan Q Gao, Monal Patel, Stijn van Dongen, Ashley Haluck-Kangas, Aishe A Sarshad, Elizabeth T Bartom, Kwang-Youn A Kim, Denise M Scholtens, Markus Hafner and 3 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. CD95/Fas ligand induced toxicity.Biochemical Society transactions · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. DISE/6mer seed toxicity-a powerful anti-cancer mechanism with implications for other diseases.Journal of experimental & clinical cancer research : CR · 2021
    Review
  18. Non-targeting control for MISSION shRNA library silencesMolecular therapy. Nucleic acids · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

William PutzbachDivision of Hematology and Oncology, Department of Medicine, Northwestern University, Chicago, United States.ORCID 0000-0002-2669-6654
Quan Q GaoDivision of Hematology and Oncology, Department of Medicine, Northwestern University, Chicago, United States.ORCID 0000-0002-3316-2968
Monal PatelDivision of Hematology and Oncology, Department of Medicine, Northwestern University, Chicago, United States.ORCID 0000-0003-1525-9915
Stijn van DongenEuropean Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom.
Ashley Haluck-KangasDivision of Hematology and Oncology, Department of Medicine, Northwestern University, Chicago, United States.
Aishe A SarshadLaboratory of Muscle Stem Cells and Gene Regulation, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, United States.
Elizabeth T BartomDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, United States.
Kwang-Youn A KimDepartment of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, United States.ORCID 0000-0002-4168-757X
Denise M ScholtensDepartment of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, United States.
Markus HafnerLaboratory of Muscle Stem Cells and Gene Regulation, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, United States.ORCID 0000-0002-4336-6518
Jonathan C ZhaoDivision of Hematology and Oncology, Department of Medicine, Northwestern University, Chicago, United States.
Andrea E MurmannDivision of Hematology and Oncology, Department of Medicine, Northwestern University, Chicago, United States.
Marcus E PeterDivision of Hematology and Oncology, Department of Medicine, Northwestern University, Chicago, United States.ORCID 0000-0003-3216-036X
Northwestern University · USNational Institutes of Health · USEuropean Bioinformatics Institute · GB

Funding

CARCINOGENESIS TRAINING PROGRAMT32CA009560 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Kathleen Janee Green · 1986 to 2026
$8.4M
DISE - a natural cancer surveillance mechanism - a new road to cancer therapyR35CA197450 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI PETER, MARCUS E. · 2015 to 2021
$6.2M
TRAINING PROGRAM IN SIGNAL TRANSDUCTION AND CANCERT32CA070085 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1997 to 2026
$5.7M
Integration of the results from systems-level determination of cis-acting elements into high-resolution maps of posttranscriptional regulatory events.ZIAAR041205 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI HAFNER, MARKUS · 2016 to 2025
$5.5M
Genomics and bioinformatics analysis to understand castration-resistant prostate cancerR50CA211271 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ZHAO, CHANGSHENG · 2016 to 2020
$701k
NCI NIH HHS R35 CA197450NCI NIH HHS R50 CA211271NCI NIH HHS T32 CA009560NCI NIH HHS T32 CA070085
6 · The paper itself

Abstract

Over 80% of multiple-tested siRNAs and shRNAs targeting CD95 or CD95 ligand (CD95L) induce a form of cell death characterized by simultaneous activation of multiple cell death pathways preferentially killing transformed and cancer stem cells. We now show these si/shRNAs kill cancer cells through canonical RNAi by targeting the 3'UTR of critical survival genes in a unique form of off-target effect we call DISE (death induced by survival gene elimination). Drosha and Dicer-deficient cells, devoid of most miRNAs, are hypersensitive to DISE, suggesting cellular miRNAs protect cells from this form of cell death. By testing 4666 shRNAs derived from the CD95 and CD95L mRNA sequences and an unrelated control gene, Venus, we have identified many toxic sequences - most of them located in the open reading frame of CD95L. We propose that specific toxic RNAi-active sequences present in the genome can kill cancer cells.

Indexed as

Cell DeathAntineoplastic AgentsCell Line, TumorCell SurvivalFas Ligand Proteinfas ReceptorHumansRNA InterferenceRNA, Small InterferingAntineoplastic AgentsFas Ligand Proteinfas ReceptorRNA, Small Interferingcancercancer biologycell biologyDISEFashumanRNAi

Identifiers

PMID29063830
PMCPMC5655136
OpenAlexW2949523646

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.