Evidence map›Paper›PMID 29062891›Full record

ArticleScience advances2017

The landscape of transcription errors in eukaryotic cells.

Jean-Francois Gout, Weiyi Li, Clark Fritsch, Annie Li, Suraiya Haroon, Larry Singh, Ding Hua, Hossein Fazelinia, Zach Smith, Steven Seeholzer and 3 more

Abstract read
In one paragraph

Article in Science advances, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed.

  1. Article
  2. Translation accuracy in E. coli.Nucleic acids research · 2026
    Article
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  17. Review
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  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Jean-Francois GoutDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.ORCID 0000-0002-4549-5647
Weiyi LiDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.ORCID 0000-0002-1168-7093
Clark FritschDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19102, USA.ORCID 0000-0002-7507-8967
Annie LiDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19102, USA.
Suraiya HaroonDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19102, USA.
Larry SinghDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19102, USA.ORCID 0000-0002-2478-5864
Ding HuaProtein and Proteomics Core, Children's Hospital of Philadelphia, Philadelphia, PA 19102, USA.ORCID 0000-0001-5897-0534
Hossein FazeliniaProtein and Proteomics Core, Children's Hospital of Philadelphia, Philadelphia, PA 19102, USA.
Zach SmithCenter for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA.
Steven SeeholzerProtein and Proteomics Core, Children's Hospital of Philadelphia, Philadelphia, PA 19102, USA.ORCID 0000-0001-5243-7667
Kelley ThomasDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, NH 03824, USA.ORCID 0000-0002-0945-5269
Michael LynchDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Marc VermulstDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19102, USA.ORCID 0000-0003-4909-5496

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Trevor M Penning · 2006 to 2026
$35.3M
Causes and Population-genetic Consequences of Molecular VariationR35GM122566 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Michael R LYNCH · 2017 to 2026
$7.7M
Translational Research Training Program in Environmental Health SciencesT32ES019851 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Kara A Bernstein, Trevor M Penning · 2012 to 2026
$6.0M
The Rate and Molecular Spectrum of Spontaneous MutationsR01GM036827 · NIGMS · UNIVERSITY OF OREGON · PI LYNCH, MICHAEL R · 1988 to 2016
$5.7M
Understanding the role of transcription errors in aging and diseaseR01AG054641 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI VERMULST, MARC · 2017 to 2021
$1.7M
Non-genetic Mutations in Aging OrganismsR00AG041809 · NIA · CHILDREN'S HOSP OF PHILADELPHIA · PI VERMULST, MARC · 2013 to 2015
$717k
NIA NIH HHS R00 AG041809NIA NIH HHS R01 AG054641NIEHS NIH HHS P30 ES013508NIEHS NIH HHS T32 ES019851NIGMS NIH HHS R01 GM036827NIGMS NIH HHS R35 GM122566
6 · The paper itself

Abstract

Accurate transcription is required for the faithful expression of genetic information. To understand the molecular mechanisms that control the fidelity of transcription, we used novel sequencing technology to provide the first comprehensive analysis of the fidelity of transcription in eukaryotic cells. Our results demonstrate that transcription errors can occur in any gene, at any location, and affect every aspect of protein structure and function. In addition, we show that multiple proteins safeguard the fidelity of transcription and provide evidence suggesting that errors that evade these layers of RNA quality control profoundly affect the physiology of living cells. Together, these observations demonstrate that there is an inherent limit to the faithful expression of the genome and suggest that the impact of mutagenesis on cellular health and fitness is substantially greater than currently appreciated.

Indexed as

MutagenesisTranscription, Genetic3' Untranslated RegionsComputational BiologyDNA-Directed RNA PolymerasesEukaryotic CellsGene Expression ProfilingMutationMutation RateNonsense Mediated mRNA DecayProtein SubunitsTranscriptomeYeasts3' Untranslated RegionsDNA-Directed RNA PolymerasesProtein Subunits

Identifiers

PMID29062891
PMCPMC5650487

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.