Evidence map›Paper›PMID 29061847›Full record

ArticleThe Journal of biological chemistry2017

Discovery of α-l-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42.

Alexander Holm Viborg, Takane Katayama, Takatoshi Arakawa, Maher Abou Hachem, Leila Lo Leggio, Motomitsu Kitaoka, Birte Svensson, Shinya Fushinobu

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Crystal structure of a homotrimeric verrucomicrobialJournal of structural biology: X · 2021
    Article
  6. Structure and function ofThe Journal of biological chemistry · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Alexander Holm ViborgFrom the Department of Biotechnology, The University of Tokyo, Tokyo 113-8657, Japan.
Takane Katayamathe Graduate School of Biostudies, Kyoto University, Koyoto 606-8502, Japan.
Takatoshi ArakawaFrom the Department of Biotechnology, The University of Tokyo, Tokyo 113-8657, Japan.ORCID 0000-0001-6496-5440
Maher Abou Hachemthe Department of Biotechnology and Biomedicine, Technical University of Denmark, DK-2400 Kgs. Lyngby, Denmark.ORCID 0000-0001-8250-1842
Leila Lo Leggiothe Department of Chemistry, University of Copenhagen, Copenhagen 2100, Denmark, and.ORCID 0000-0002-5135-0882
Motomitsu Kitaokathe Food Research Institute, National Agriculture and Food Research Organization, Tsukuba 305-8642, Japan.ORCID 0000-0002-0083-1838
Birte Svenssonthe Department of Biotechnology and Biomedicine, Technical University of Denmark, DK-2400 Kgs. Lyngby, Denmark.
Shinya FushinobuFrom the Department of Biotechnology, The University of Tokyo, Tokyo 113-8657, Japan, asfushi@mail.ecc.u-tokyo.ac.jp.ORCID 0000-0003-1346-6435
The University of Tokyo · JPTechnical University of Denmark · DKIshikawa Prefectural University · JPNational Agriculture and Food Research Organization · JPUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enzymes of the glycoside hydrolase family 42 (GH42) are widespread in bacteria of the human gut microbiome and play fundamental roles in the decomposition of both milk and plant oligosaccharides. All GH42 enzymes characterized so far have β-galactosidase activity. Here, we report the existence of a GH42 subfamily that is exclusively specific for α-l-arabinopyranoside and describe the first representative of this subfamily. We found that this enzyme (

Indexed as

Gastrointestinal MicrobiomeAmino Acid SubstitutionBacterial ProteinsBifidobacterium animalisCarbohydrate ConformationCatalytic DomainComputational BiologyCrystallography, X-RayDisaccharidesGinsenosidesGlycoside HydrolasesGlycosidesHumansLigandsModels, MolecularMolecular Docking SimulationBacterial ProteinsDisaccharidesGinsenosidesGlycoside HydrolasesGlycosidesLigandsRecombinant Proteinsbeta-galactosidasebifidobacteriumcarbohydrate metabolismCAZymecrystallographyenzyme structureglycobiologyglycoside hydrolasemicrobiota

Identifiers

PMID29061847
PMCPMC5743082
OpenAlexW2765426326

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.