Evidence map›Paper›PMID 29061115›Full record

ArticleBMC plant biology2017

Comparative transcriptomic analyses of normal and malformed flowers in sugar apple (Annona squamosa L.) to identify the differential expressed genes between normal and malformed flowers.

Kaidong Liu, Haili Li, Weijin Li, Jundi Zhong, Yan Chen, Chenjia Shen, Changchun Yuan

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  4. Transcriptome Analysis of Soursop (Plants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kaidong LiuLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, People's Republic of China. liukaidong2001@126.com.
Haili LiLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, People's Republic of China.
Weijin LiLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, People's Republic of China.
Jundi ZhongLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, People's Republic of China.
Yan ChenLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, People's Republic of China.
Chenjia ShenCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Changchun YuanLife Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong, 524048, People's Republic of China.
Lingnan Normal University · CNHangzhou Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSugar apple (Annona squamosa L.), a popular fruit with high medicinal and nutritional properties, is widely cultivated in tropical South Asia and America. The malformed flower is a major cause for a reduction in production of sugar apple. However, little information is available on the differences between normal and malformed flowers of sugar apple.

resultsTo gain a comprehensive perspective on the differences between normal and malformed flowers of sugar apple, cDNA libraries from normal and malformation flowers were prepared independently for Illumina sequencing. The data generated a total of 70,189,896 reads that were integrated and assembled into 55,097 unigenes with a mean length of 783 bp. A large number of differentially expressed genes (DEGs) were identified. Among these DEGs, 701 flower development-associated transcript factor encoding genes were included. Furthermore, a large number of flowering- and hormone-related DEGs were also identified, and most of these genes were down-regulated expressed in the malformation flowers. The expression levels of 15 selected genes were validated using quantitative-PCR. The contents of several endogenous hormones were measured. The malformed flowers displayed lower endogenous hormone levels compared to the normal flowers.

conclusionsThe expression data as well as hormone levels in our study will serve as a comprehensive resource for investigating the regulation mechanism involved in floral organ development in sugar apple.

Indexed as

AnnonaFlowersGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantReal-Time Polymerase Chain ReactionA. squamosaDigital gene expressionMalformed flowerNormal flowerPhytohormoneTranscriptome

Identifiers

PMID29061115
PMCPMC5653983
OpenAlexW2765444512

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.