Evidence map›Paper›PMID 29061044›Full record

ArticleJournal of proteome research2018

Ubiquitin Conjugation Probed by Inflammation in Myeloid-Derived Suppressor Cell Extracellular Vesicles.

Katherine R Adams, Sitara Chauhan, Divya B Patel, Virginia K Clements, Yan Wang, Steven M Jay, Nathan J Edwards, Suzanne Ostrand-Rosenberg, Catherine Fenselau

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
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  6. Review
  7. Article
  8. Review
  9. Distinct Origin of Claudin7 in Early Tumor Endosomes Affects Exosome Assembly.International journal of biological sciences · 2019
    Article
  10. The emerging spectrum of early life exposure-related inflammation and epigenetic therapy.Cancer studies and molecular medicine : open journal · 2018
    Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Katherine R Adams
Sitara Chauhan
Divya B Patel
Virginia K ClementsDepartment of Biological Sciences, University of Maryland, Baltimore County , Baltimore, Maryland 21250, United States.
Yan WangProteomic Core Facility, College of Mathematics and Natural Sciences, University of Maryland , College Park, Maryland 20742, United States.
Nathan J EdwardsDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center , Washington D.C. 20057, United States.
Suzanne Ostrand-RosenbergDepartment of Biological Sciences, University of Maryland, Baltimore County , Baltimore, Maryland 21250, United States.
Catherine FenselauORCID 0000-0003-4979-0229
University of Maryland, College Park · USUniversity of Maryland, Baltimore County · USGeorgetown University · US

Funding

Ubiquitinated Proteins in Exosomes of Immune Suppressive Myeloid CellsR01GM021248 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI FENSELAU, CATHERINE C, FUSHMAN, DAVID · 1985 to 2017
$4.6M
Engineering NRG Signaling For Therapeutic Vascularization In Diabetic WoundsR00HL112905 · NHLBI · UNIV OF MARYLAND, COLLEGE PARK · PI JAY, STEVEN MICHAEL · 2013 to 2015
$730k
Orbitrap Fusion Tribrid Mass SpectrometerS10OD019938 · OD · UNIV OF MARYLAND, COLLEGE PARK · PI FENSELAU, CATHERINE C · 2015 to 2015
$600k
APPLICATIONS OF MASS SPECTROMETRY IN PHARMACOLOGYR37GM021248 · NIGMS · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI FENSELAU, CATHERINE C. · 1992 to 2001
$438k
Engineering NRG Signaling For Therapeutic Vascularization In Diabetic WoundsK99HL112905 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI JAY, STEVEN MICHAEL · 2012 to 2013
$182k
NHLBI NIH HHS K99 HL112905NHLBI NIH HHS R00 HL112905NIGMS NIH HHS R01 GM021248NIGMS NIH HHS R37 GM021248NIH HHS S10 OD019938
6 · The paper itself

Abstract

Ubiquitinated proteins carried by the extracellular vesicles (EV) released by myeloid-derived suppressor cells (MDSC) have been investigated using proteomic strategies to examine the effect of tumor-associated inflammation. EV were collected from MDSC directly following isolation from tumor-bearing mice with low and high inflammation. Among the 1092 proteins (high inflammation) and 925 proteins (low inflammation) identified, more than 50% were observed as ubiquitinated proteoforms. More than three ubiquitin-attachment sites were characterized per ubiquitinated protein, on average. Multiple ubiquitination sites were identified in the pro-inflammatory proteins S100 A8 and S100 A9, characteristic of MDSC and in histones and transcription regulators among other proteins. Spectral counting and pathway analysis suggest that ubiquitination occurs independently of inflammation. Some ubiquitinated proteins were shown to cause the migration of MDSC, which has been previously connected with immune suppression and tumor progression. Finally, MDSC EV are found collectively to carry all the enzymes required to catalyze ubiquitination, and the hypothesis is presented that a portion of the ubiquitinated proteins are produced in situ.

Indexed as

InflammationAnimalsBinding SitesCell MovementExtracellular VesiclesMiceMyeloid-Derived Suppressor CellsUbiquitinUbiquitinated ProteinsUbiquitinationUbiquitinUbiquitinated Proteinsextracellular vesiclesinflammationLC−MS/MSMDSCspectral countingtop-down proteomicstumor-induced immune suppressionubiquitome

Identifiers

PMID29061044
PMCPMC6137330
OpenAlexW2766284882

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.