Evidence map›Paper›PMID 29058723›Full record

ArticleNature chemical biology2017

Electrophilic probes for deciphering substrate recognition by O-GlcNAc transferase.

Chia-Wei Hu, Matthew Worth, Dacheng Fan, Baobin Li, Hao Li, Lei Lu, Xiaofang Zhong, Ziqing Lin, Liming Wei, Ying Ge and 2 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. O-GlcNAc informatics: advances and trends.Analytical and bioanalytical chemistry · 2025
    Review
  3. OGT and OGA: Sweet guardians of the genome.The Journal of biological chemistry · 2024
    Review
  4. Article
  5. Article
  6. Promiscuous Enzymes for Residue-Specific Peptide and Protein Late-Stage Functionalization.Chembiochem : a European journal of chemical biology · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Advances in chemical probing of proteinChemical Society reviews · 2021
    Review
  13. Article
  14. Article
  15. Overview of the Assays to ProbeMolecules (Basel, Switzerland) · 2021
    Review
  16. Article
  17. Article
  18. Molecular Interrogation to Crack the Case of O-GlcNAc.Chemistry (Weinheim an der Bergstrasse, Germany) · 2020
    Review
  19. Article
  20. Targeted covalent inhibition of O-GlcNAc transferase in cells.Chemical communications (Cambridge, England) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Chia-Wei HuPharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Matthew WorthDepartment of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Dacheng FanPharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Baobin LiPharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID http://orcid.org/0000-0002-4560-4575
Hao LiPharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID http://orcid.org/0000-0001-6514-0352
Lei LuPharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Xiaofang ZhongPharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Ziqing LinDepartment of Cell and Regenerative Biology, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Liming WeiDepartment of Cell and Regenerative Biology, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Ying GeDepartment of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID http://orcid.org/0000-0001-5211-6812
Lingjun LiPharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID http://orcid.org/0000-0003-0056-3869
Jiaoyang JiangPharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin, USA.

Funding

Deciphering Myofilament Modifications in Ischemic CardiomyopathyR01HL109810 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI GE, YING · 2013 to 2024
$3.5M
Chemical Probes to Characterize the Functional States of O-GlcNAc TransferaseR01GM121718 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Jiaoyang Jiang · 2017 to 2026
$3.3M
Enabling Top-Down Proteomics through Materials Chemistry and NanotechnologyR01GM117058 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GE, YING, JIN, SONG · 2015 to 2023
$2.7M
Acquisition of a High-Field Dual Source FTICR-MS for Pharmaceutical ResearchS10RR029531 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2011 to 2011
$2.1M
Ultra High Resolution Mass Spectrometer for Biomedical ResearchS10OD018475 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI GE, YING · 2015 to 2015
$2.0M
Mass Defect-based Chemical Tags for Multiplex Glycan QuantitationR21AG055377 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2016 to 2017
$603k
NCRR NIH HHS S10 RR029531NHLBI NIH HHS R01 HL109810NIA NIH HHS R21 AG055377NIGMS NIH HHS R01 GM117058NIGMS NIH HHS R01 GM121718NIH HHS S10 OD018475
6 · The paper itself

Abstract

O-linked β-N-acetylglucosamine (O-GlcNAc) transferase (OGT) is an essential human glycosyltransferase that adds O-GlcNAc modifications to numerous proteins. However, little is known about the mechanism with which OGT recognizes various protein substrates. Here we report on GlcNAc electrophilic probes (GEPs) to expedite the characterization of OGT-substrate recognition. Data from mass spectrometry, X-ray crystallization, and biochemical and radiolabeled kinetic assays support the application of GEPs to rapidly report the impacts of OGT mutations on protein substrate or sugar binding and to discover OGT residues crucial for protein recognition. Interestingly, we found that the same residues on the inner surface of the N-terminal domain contribute to OGT interactions with different protein substrates. By tuning reaction conditions, a GEP enables crosslinking of OGT with acceptor substrates in situ, affording a unique method to discover genuine substrates that weakly or transiently interact with OGT. Hence, GEPs provide new strategies to dissect OGT-substrate binding and recognition.

Indexed as

Crystallography, X-RayHumansKineticsMass SpectrometryModels, MolecularMolecular ConformationMolecular ProbesMutationN-AcetylglucosaminyltransferasesSubstrate SpecificityMolecular ProbesN-AcetylglucosaminyltransferasesO-GlcNAc transferase

Identifiers

PMID29058723
PMCPMC5698155

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.