Evidence map›Paper›PMID 29058410›Full record

ArticleAnalytical chemistry2017

Spin System Modeling of Nuclear Magnetic Resonance Spectra for Applications in Metabolomics and Small Molecule Screening.

Hesam Dashti, William M Westler, Marco Tonelli, Jonathan R Wedell, John L Markley, Hamid R Eghbalnia

Abstract read
In one paragraph

Article in Analytical chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. 2D-JCOG: Transforming 1DAnalytical chemistry · 2026
    Article
  3. Article
  4. The NMR Exchange Format (NEF): Specification and Applications.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Metabolite Fraction Libraries for Quantitative NMR Metabolomics.bioRxiv : the preprint server for biology · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Chemical Composition of Commercial Cannabis.Journal of agricultural and food chemistry · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Biological Magnetic Resonance Data Bank.Nucleic acids research · 2023
    Article
  16. Problems, principles and progress in computational annotation of NMR metabolomics data.Metabolomics : Official journal of the Metabolomic Society · 2022
    Review
  17. Article
  18. Article
  19. Signature of Glycylglutamic Acid Structure.International journal of biochemistry and biophysics · 2021
    Article
  20. Automatic 1DMetabolites · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hesam DashtiNational Magnetic Resonance Facility at Madison and BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
William M WestlerNational Magnetic Resonance Facility at Madison and BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Marco TonelliNational Magnetic Resonance Facility at Madison and BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Jonathan R WedellNational Magnetic Resonance Facility at Madison and BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
John L MarkleyNational Magnetic Resonance Facility at Madison and BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.ORCID 0000-0003-1799-6134
Hamid R EghbalniaNational Magnetic Resonance Facility at Madison and BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

Funding

TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
TR&D 3: TECHNOLOGY DEVELOPMENT FOR NMR STUDIES OF SMALL MOLECULES (METABOLOMICS, NATURAL PRODUCTS, METABOLITE-PROTEIN INTERACTIONS) pp.537-585 P41GM103399 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BUTCHER, SAMUEL E · 2012 to 2019
$9.4M
The BMRB as an evolving resource for biomolecular structure-function researchR01GM109046 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HOCH, JEFFREY C · 2014 to 2022
$6.6M
NIGMS NIH HHS P41 GM103399NIGMS NIH HHS P41 GM111135NIGMS NIH HHS R01 GM109046
6 · The paper itself

Abstract

The exceptionally rich information content of nuclear magnetic resonance (NMR) spectra is routinely used to identify and characterize molecules and molecular interactions in a wide range of applications, including clinical biomarker discovery, drug discovery, environmental chemistry, and metabolomics. The set of peak positions and intensities from a reference NMR spectrum generally serves as the identifying signature for a compound. Reference spectra normally are collected under specific conditions of pH, temperature, and magnetic field strength, because changes in conditions can distort the identifying signatures of compounds. A spin system matrix that parametrizes chemical shifts and coupling constants among spins provides a much richer feature set for a compound than a spectral signature based on peak positions and intensities. Spin system matrices expand the applicability of NMR spectral libraries beyond the specific conditions under which data were collected. In addition to being able to simulate spectra at any field strength, spin parameters can be adjusted to systematically explore alterations in chemical shift patterns due to variations in other experimental conditions, such as compound concentration, pH, or temperature. We present methodology and software for efficient interactive optimization of spin parameters against experimental 1D-

Indexed as

Magnetic Resonance SpectroscopyHydrogen-Ion ConcentrationLigandsMetabolomicsSmall Molecule LibrariesSoftwareTemperatureLigandsSmall Molecule Libraries

Identifiers

PMID29058410
PMCPMC5705194

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.