Evidence map›Paper›PMID 29056345›Full record

ArticleCell2017

A Genetic Tool to Track Protein Aggregates and Control Prion Inheritance.

Gregory A Newby, Szilvia Kiriakov, Erinc Hallacli, Can Kayatekin, Peter Tsvetkov, Christopher P Mancuso, J Maeve Bonner, William R Hesse, Sohini Chakrabortee, Anita L Manogaran and 3 more

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in Cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Characterizing Optogenetic Tools for Use in Synthetic Gene Circuits.Methods in molecular biology (Clifton, N.J.) · 2026
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  8. Review
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  11. A Toolkit for Precise, Multigene Control inACS synthetic biology · 2022
    Article
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  18. Review
  19. FRET-Based Screening Identifies p38 MAPK and PKC Inhibition as Targets for Prevention of Seeded α-Synuclein Aggregation.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2021
    Article
  20. Protein aggregation and the evolution of stress resistance in clinical yeast.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Gregory A NewbyDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Szilvia KiriakovProgram in Molecular Biology, Cell Biology, and Biochemistry, Boston University, Boston, MA 02215, USA; Biological Design Center, Boston University, Boston, MA 02215, USA.
Erinc HallacliWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Ann Romney Center for Neurologic Disease, Department of Neurology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Can KayatekinWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Peter TsvetkovWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Christopher P MancusoBiological Design Center, Boston University, Boston, MA 02215, USA; Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA.
J Maeve BonnerWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
William R HesseWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Sohini ChakraborteeWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Anita L ManogaranDepartment of Biological Sciences, Marquette University, Milwaukee, WI 53201, USA.
Susan W LiebmanDepartment of Pharmacology, University of Nevada, Reno, NV 89557, USA.
Susan LindquistDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Cambridge, MA 02139, USA.
Ahmad S KhalilBiological Design Center, Boston University, Boston, MA 02215, USA; Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA. Electronic address: khalil@bu.edu.
Whitehead Institute for Biomedical Research · USBoston University · USHarvard University · USMarquette University · USMassachusetts Institute of Technology · USUniversity of Nevada, Reno · US

Funding

YEAST PRION FACTOR (PSI+)R01GM056350 · NIGMS · UNIVERSITY OF NEVADA RENO · PI LIEBMAN, SUSAN W · 1997 to 2018
$6.6M
Combatting antibiotic resistance with synthetic biology technologiesDP2AI131083 · NIAID · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI KHALIL, AHMAD SAMIR · 2016 to 2016
$2.5M
NIAID NIH HHS DP2 AI131083NIGMS NIH HHS R01 GM056350
6 · The paper itself

Abstract

Protein aggregation is a hallmark of many diseases but also underlies a wide range of positive cellular functions. This phenomenon has been difficult to study because of a lack of quantitative and high-throughput cellular tools. Here, we develop a synthetic genetic tool to sense and control protein aggregation. We apply the technology to yeast prions, developing sensors to track their aggregation states and employing prion fusions to encode synthetic memories in yeast cells. Utilizing high-throughput screens, we identify prion-curing mutants and engineer "anti-prion drives" that reverse the non-Mendelian inheritance pattern of prions and eliminate them from yeast populations. We extend our technology to yeast RNA-binding proteins (RBPs) by tracking their propensity to aggregate, searching for co-occurring aggregates, and uncovering a group of coalescing RBPs through screens enabled by our platform. Our work establishes a quantitative, high-throughput, and generalizable technology to study and control diverse protein aggregation processes in cells.

Indexed as

Genetic TechniquesGenetic EngineeringmRNA Cleavage and Polyadenylation FactorsPrionsRNA-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSynthetic BiologyHRP1 protein, S cerevisiaemRNA Cleavage and Polyadenylation FactorsPrionsRNA-Binding ProteinsSaccharomyces cerevisiae Proteinsepigeneticshigh-throughput screeningmemoryprionsprotein aggregationRNA-binding proteinssynthetic biologysynthetic transcription factoryTRAP

Identifiers

PMID29056345
PMCPMC5675731
OpenAlexW2765107589

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.