Evidence map›Paper›PMID 29052750›Full record

ArticleImmunogenetics2018

Impact of a CD4 gene haplotype on the immune response in minipigs.

Fany Blanc, Françoise Créchet, Nicolas Bruneau, Guillaume Piton, Jean-Jacques Leplat, Fabrice Andréoletti, Giorgia Egidy, Silvia Vincent-Naulleau, Emmanuelle Bourneuf

Abstract read
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In one paragraph

Article in Immunogenetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Fany BlancLREG, CEA, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
Françoise CréchetLREG, CEA, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
Nicolas BruneauLREG, CEA, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
Guillaume PitonLREG, CEA, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
Jean-Jacques LeplatLREG, CEA, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
Fabrice AndréolettiLREG, CEA, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
Giorgia EgidyLREG, CEA, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
Silvia Vincent-NaulleauLREG, CEA, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
Emmanuelle BourneufLREG, CEA, Université Paris-Saclay, 78350, Jouy-en-Josas, France. Emmanuelle.bourneuf@cea.fr.
AgroParisTech · FRInserm · FR

Funding

Institut National Du Cancer INCa_5982
6 · The paper itself

Abstract

The cluster of differentiation 4 (CD4) molecule functions as a co-receptor for MHC class II binding to TCR in T helper cells. A CD4 epitope deficiency was identified in the swine MeLiM (melanoblastoma-bearing Libechov minipig) strain, a model for spontaneous cutaneous melanoma development and regression. Extensive sequencing revealed a high genetic variability of CD4 and the existence of several haplotypes segregating in MeLiM. Forty polymorphisms were identified in the coding sequence, out of which 20 correspond to non-synonymous variants and 10 are located in the 3'UTR of CD4 transcripts. One of the haplotypes segregating in the MeLiM explained the epitope deficiency observed. An association analysis between CD4 genotype and several phenotypes related to tumor regression was performed in 267 animals. An association was evidenced between a MeLiM alternative CD4 haplotype and skin and eye depigmentation, as well as the extent of hair depigmentation. Also, seric IgG concentration was shown to be higher in pigs carrying the alternative haplotype at the homozygous state. In conclusion, the genetic variability of the CD4 gene is associated with immune response-related phenotypes in MeLiM minipigs.

Indexed as

HaplotypesAmino Acid SequenceAnimalsBase SequenceCD4 AntigensFemaleGenetic Predisposition to DiseaseImmunoglobulin GMaleMelanomaPolymorphism, Single NucleotideSequence Homology, Amino AcidSequence Homology, Nucleic AcidSkin NeoplasmsSkin PigmentationSwineCD4 AntigensImmunoglobulin GCD4DepigmentationMelanomaPigPolymorphismSeric IgG levels

Identifiers

PMID29052750
OpenAlexW2765873356

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.