Evidence map›Paper›PMID 29052269›Full record

ArticleMolecular microbiology2017

Control of biotin biosynthesis in mycobacteria by a pyruvate carboxylase dependent metabolic signal.

Nathaniel Lazar, Allison Fay, Madhumitha Nandakumar, Kerry E Boyle, Joao Xavier, Kyu Rhee, Michael S Glickman

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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  11. The primary step of biotin synthesis in mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nathaniel LazarImmunology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Allison FayImmunology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Madhumitha NandakumarWeill-Cornell Medical College, New York, NY, USA.
Kerry E BoyleProgram in Immunology and Microbial Pathogenesis, Weill-Cornell Graduate School of Medical Sciences, New York, NY, USA.
Joao XavierProgram in Computational Biology, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY, USA.
Kyu RheeProgram in Immunology and Microbial Pathogenesis, Weill-Cornell Graduate School of Medical Sciences, New York, NY, USA.
Michael S GlickmanImmunology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-7918-5164
Memorial Sloan Kettering Cancer Center · USCornell University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Viable but Nonculturable MtbU19AI111143 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI EHRT, SABINE, GLICKMAN, MICHAEL S · 2014 to 2020
$48.6M
Molecular Analysis of the Rip1 Virulence Pathway of M. tuberculosisR01AI080628 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI GLICKMAN, MICHAEL S · 2009 to 2010
$942k
NCI NIH HHS P30 CA008748NIAID NIH HHS R01 AI080628NIAID NIH HHS U19 AI111143
6 · The paper itself

Abstract

Biotin is an essential cofactor utilized by all domains of life, but only synthesized by bacteria, fungi and plants, making biotin biosynthesis a target for antimicrobial development. To understand biotin biosynthesis in mycobacteria, we executed a genetic screen in Mycobacterium smegmatis for biotin auxotrophs and identified pyruvate carboxylase (Pyc) as required for biotin biosynthesis. The biotin auxotrophy of the pyc::tn strain is due to failure to transcriptionally induce late stage biotin biosynthetic genes in low biotin conditions. Loss of bioQ, the repressor of biotin biosynthesis, in the pyc::tn strain reverted biotin auxotrophy, as did reconstituting the last step of the pathway through heterologous expression of BioB and provision of its substrate DTB. The role of Pyc in biotin regulation required its catalytic activities and could be supported by M. tuberculosis Pyc. Quantitation of the kinetics of depletion of biotinylated proteins after biotin withdrawal revealed that Pyc is the most rapidly depleted biotinylated protein and metabolomics revealed a broad metabolic shift in wild type cells upon biotin withdrawal which was blunted in cell lacking Pyc. Our data indicate that mycobacterial cells monitor biotin sufficiency through a metabolic signal generated by dysfunction of a biotinylated protein of central metabolism.

Indexed as

Gene Expression Regulation, BacterialBiotinClustered Regularly Interspaced Short Palindromic RepeatsHomologous RecombinationMetabolomicsMycobacterium smegmatisPyruvate CarboxylaseRNA, MessengerUp-RegulationBiotinPyruvate CarboxylaseRNA, Messenger

Identifiers

PMID29052269
PMCPMC5916780
OpenAlexW2765559256

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.