Evidence map›Paper›PMID 29052059›Full record

ArticleArchives of virology2018

Rotavirus A strains obtained from children with acute gastroenteritis in Mozambique, 2012-2013: G and P genotypes and phylogenetic analysis of VP7 and partial VP4 genes.

Eva Dora João, Amy Strydom, Hester G O'Neill, Assa Cuamba, Marta Cassocera, Sozinho Acácio, Inácio Mandomando, Lithabiso Motanyane, Nicola Page, Nilsa de Deus

Abstract read
In one paragraph

Article in Archives of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Eva Dora JoãoCentro de Investigação em Saúde de Manhiça (CISM), Manhiça, Mozambique.
Amy StrydomDepartment of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa.
Hester G O'NeillDepartment of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa.
Assa CuambaFaculdade de Medicina, Universidade Eduardo Mondlane, Maputo, Mozambique.
Marta CassoceraInstituto Nacional de Saúde, Maputo, Mozambique.
Sozinho AcácioCentro de Investigação em Saúde de Manhiça (CISM), Manhiça, Mozambique.
Inácio MandomandoCentro de Investigação em Saúde de Manhiça (CISM), Manhiça, Mozambique.
Lithabiso MotanyaneDepartment of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa.
Nicola PageCentre for Enteric Diseases, National Institute for Communicable Disease (NICD), A division of National Health Laboratory Services, Johannesburg, South Africa.
Nilsa de DeusCentro de Investigação em Saúde de Manhiça (CISM), Manhiça, Mozambique. ndeus1@yahoo.com.

Funding

European Foundation Initiative for African Research into Neglected Tropical Diseases (EFINTD) 89539Mozambique/South Africa Research Cooperative Programme 86822
6 · The paper itself

Abstract

In Mozambique rotavirus (RV) was shown to be the greatest cause of acute diarrhoea in infants from 0 to 11 months, and in 2015, national rotavirus vaccination was introduced. As with other developing countries, there is very limited active strain characterisation. Rotavirus positive clinical specimens, collected between 2012 and 2013, have now provided information on the genotypes circulating in southern Mozambique prior to vaccine introduction. Genotypes G2 (32.4%), G12 (28.0%), P[4] (41.4%) and P[6] (22.9%) (n = 157) strains were commonly detected with G2P[4] (42.3%) RVs being predominant, specifically during 2013. Phylogenetic evaluation of the VP7 and VP8* encoding genes showed, for the majority of the Mozambican strains, that they clustered with other African strains based on genotype. RVA/Human-wt/MOZ/0153/2013/G2P[4], RVA/Human-wt/MOZ/0308/2012/G2P[4] and RVA/Human-wt/MOZ/0288/2012/G12P[8] formed separate clusters from the other Mozambican strains with similar genotypes, suggesting possible reassortment. Amino acid substitutions in selected epitope regions also supported phylogenetic clustering. As expected, the VP7 and VP8* genes from the Mozambican strains differed from both the RotaTeq

Indexed as

GenotypeAntigens, ViralCapsid ProteinsChild, PreschoolEpitopesGastroenteritisGene Expression Regulation, ViralHumansMozambiquePhylogenyRotavirusRotavirus InfectionsAntigens, ViralCapsid ProteinsEpitopesVP4 protein, RotavirusVP7 protein, Rotavirus

Identifiers

PMID29052059
PMCPMC5756281

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.