Evidence map›Paper›PMID 29052008›Full record

ArticleProtoplasma2018

Genome-wide analysis and expression profiling of PP2C clade D under saline and alkali stresses in wild soybean and Arabidopsis.

Chao Chen, Yang Yu, Xiaodong Ding, Beidong Liu, Huizi Duanmu, Dan Zhu, Xiaoli Sun, Lei Cao, Zaib-Un-Nisa, Qiang Li and 1 more

Abstract read
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In one paragraph

Article in Protoplasma, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  4. Mainstreaming3 Biotech · 2025
    Review
  5. A wild-allele GsPP2C-51-a1 enhances tolerance to drought stress in soybean and Arabidopsis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
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  9. Identification and Characterization of theInternational journal of molecular sciences · 2023
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  10. Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2023
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  11. Article
  12. Genome-wide characterization of theFrontiers in plant science · 2023
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  13. Article
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  15. Article
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  17. Frontiers in plant science · 2022
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  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Chao ChenKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, People's Republic of China.
Yang YuKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, People's Republic of China.
Xiaodong DingKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, People's Republic of China.
Beidong LiuDepartment of chemistry and molecular biology, University of Gothenburg, S-413 90, Gothenburg, Sweden.
Huizi DuanmuKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, People's Republic of China.
Dan ZhuCollege of Life Science, Qingdao Agricultural University, Qingdao, People's Republic of China.
Xiaoli SunCrop Stress Molecular Biology Laboratory, Heilongjiang Bayi Agricultural University, Daqing, People's Republic of China.
Lei CaoKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, People's Republic of China.
Zaib-Un-NisaKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, People's Republic of China.
Qiang LiKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, People's Republic of China.
Yanming ZhuKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, People's Republic of China. ymzhu2001@neau.edu.cn.
Northeast Agricultural University · CNHeilongjiang Bayi Agricultural University · CNQingdao Agricultural University · CNUniversity of Gothenburg · SE

Funding

Advanced Talents Foundation of QAU 6631115032Heilongjiang Provincial Higher School Science and Technology Innovation Team Building Program 2011TD005National Natural Science Foundation of China 31501331
6 · The paper itself

Abstract

Protein phosphatase 2Cs (PP2Cs) belong to the largest protein phosphatase family in plants. Some members have been described as being negative modulators of plant growth and development, as well as responses to hormones and environmental stimuli. However, little is known about the members of PP2C clade D, which may be involved in the regulation of signaling pathways, especially in response to saline and alkali stresses. Here, we identified 13 PP2C orthologs from the wild soybean (Glycine soja) genome. We examined the sequence characteristics, chromosome locations and duplications, gene structures, and promoter cis-elements of the PP2C clade D genes in Arabidopsis and wild soybean. Our results showed that GsPP2C clade D (GsAPD) genes exhibit more gene duplications than AtPP2C clade D genes. Plant hormone and abiotic stress-responsive elements were identified in the promoter regions of most PP2C genes. Moreover, we investigated their expression patterns in roots, stems, and leaves. Quantitative real-time PCR analyses revealed that the expression levels of representative GsPP2C and AtPP2C clade D genes were significantly influenced by alkali and salt stresses, suggesting that these genes might be associated with or directly involved in the relevant stress signaling pathways. Our results established a foundation for further functional characterization of PP2C clade D genes in the future.

Indexed as

Gene Expression ProfilingGenome, PlantPhylogenyAlkaliesArabidopsisChromosomes, PlantGene Expression Regulation, PlantGenes, PlantGlycine maxOrgan SpecificityPhosphoprotein PhosphatasesPromoter Regions, GeneticSodium ChlorideStress, PhysiologicalAlkaliesPhosphoprotein PhosphatasesSodium ChlorideAlkaliArabidopsisPP2C clade DSaltWild soybean

Identifiers

PMID29052008
OpenAlexW2765145145

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.