Evidence map›Paper›PMID 29051919›Full record

ArticleAIMS biophysics2017

Protein crystallization: Eluding the bottleneck of X-ray crystallography.

Joshua Holcomb, Nicholas Spellmon, Yingxue Zhang, Maysaa Doughan, Chunying Li, Zhe Yang

Abstract read
In one paragraph

Article in AIMS biophysics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Heterogeneous Nucleation in Protein Crystallization.Biomimetics (Basel, Switzerland) · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Nanobody-aided crystallization of the transcription regulator PaaR2 from Escherichia coli O157:H7.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joshua HolcombDepartment of Microbiology, Immunology, and Biochemistry, Wayne State University School of Medicine, Detroit, MI, USA.
Nicholas SpellmonDepartment of Microbiology, Immunology, and Biochemistry, Wayne State University School of Medicine, Detroit, MI, USA.
Yingxue ZhangDepartment of Microbiology, Immunology, and Biochemistry, Wayne State University School of Medicine, Detroit, MI, USA.
Maysaa DoughanDepartment of Microbiology, Immunology, and Biochemistry, Wayne State University School of Medicine, Detroit, MI, USA.
Chunying LiCenter for Molecular and Translational Medicine, Georgia State University, Atlanta, GA, USA.
Zhe YangDepartment of Microbiology, Immunology, and Biochemistry, Wayne State University School of Medicine, Detroit, MI, USA.

Funding

Chemokine Signaling in EPC Angiogenesis: A Role of Lysine MethylationR01HL128647 · NHLBI · WAYNE STATE UNIVERSITY · PI LI, CHUNYING · 2015 to 2019
$1.8M
Detroit Cardiovascular Training ProgramT32HL120822 · NHLBI · WAYNE STATE UNIVERSITY · PI LEVY, PHILLIP DAVID · 2014 to 2023
$1.8M
NHLBI NIH HHS R01 HL128647NHLBI NIH HHS T32 HL120822
6 · The paper itself

Abstract

To date, X-ray crystallography remains the gold standard for the determination of macromolecular structure and protein substrate interactions. However, the unpredictability of obtaining a protein crystal remains the limiting factor and continues to be the bottleneck in determining protein structures. A vast amount of research has been conducted in order to circumvent this issue with limited success. No single method has proven to guarantee the crystallization of all proteins. However, techniques using antibody fragments, lipids, carrier proteins, and even mutagenesis of crystal contacts have been implemented to increase the odds of obtaining a crystal with adequate diffraction. In addition, we review a new technique using the scaffolding ability of PDZ domains to facilitate nucleation and crystal lattice formation. Although in its infancy, such technology may be a valuable asset and another method in the crystallography toolbox to further the chances of crystallizing problematic proteins.

Indexed as

carrier mediated crystallizationPDZ scaffold mediated crystallizationprotein crystallizationX-ray crystallography

Identifiers

PMID29051919
PMCPMC5645037

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.