Evidence map›Paper›PMID 29051575›Full record

ArticleScientific reports2017

Substrate recognition by two different P450s: Evidence for conserved roles in a common fold.

Drew R Tietz, Allison M Colthart, Susan Sondej Pochapsky, Thomas C Pochapsky

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In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Drew R TietzDepartment of Chemistry, Brandeis University, MS 015, 415 South St, Waltham, MA, 02453, USA.
Allison M ColthartDepartment of Biochemistry and the Rosenstiel Basic Medical Sciences Research Institute, Brandeis University, 415 South St., Waltham, MA, 02453, USA.
Susan Sondej PochapskyDepartment of Chemistry, Brandeis University, MS 015, 415 South St, Waltham, MA, 02453, USA.
Thomas C PochapskyDepartment of Chemistry, Brandeis University, MS 015, 415 South St, Waltham, MA, 02453, USA. pochapsk@brandeis.edu.ORCID 0000-0001-8995-1088

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
STRUCTURE AND DYNAMICS OF METAL-CONTAINING PROTEINSR01GM044191 · NIGMS · BRANDEIS UNIVERSITY · PI POCHAPSKY, THOMAS CHARLES · 1995 to 2012
$3.4M
NIGMS NIH HHS P41 GM103311NIGMS NIH HHS R01 GM044191
6 · The paper itself

Abstract

Cytochrome P450 monooxygenases CYP101A1 and MycG catalyze regio- and stereospecific oxidations of their respective substrates, d-camphor and mycinamicin IV. Despite the low sequence homology between the two enzymes (29% identity) and differences in size and hydrophobicity of their substrates, the conformational changes that occur upon substrate binding in both enzymes as determined by solution NMR methods show some striking similarities. Many of the same secondary structural features in both enzymes are perturbed, suggesting the existence of a common mechanism for substrate binding and recognition in the P450 superfamily.

Indexed as

Bacterial ProteinsCamphorCamphor 5-MonooxygenaseCatalytic DomainCytochrome P-450 Enzyme SystemMacrolidesMagnetic Resonance SpectroscopyProtein ConformationStereoisomerismSubstrate SpecificityBacterial ProteinsCamphorCamphor 5-MonooxygenaseCytochrome P-450 Enzyme SystemMacrolidesMycG protein, Micromonosporamycinamicins

Identifiers

PMID29051575
PMCPMC5648816

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.