Evidence map›Paper›PMID 29051230›Full record

ArticleEMBO molecular medicine2017

iPhemap: an atlas of phenotype to genotype relationships of human iPSC models of neurological diseases.

Ethan W Hollingsworth, Jacob E Vaughn, Josh C Orack, Chelsea Skinner, Jamil Khouri, Sofia B Lizarraga, Mark E Hester, Fumihiro Watanabe, Kenneth S Kosik, Jaime Imitola

Abstract read
In one paragraph

Article in EMBO molecular medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Phenotyping Neurodegeneration in Human iPSCs.Annual review of biomedical data science · 2021
    Review
  6. Article
  7. Review
  8. Article
  9. New age for progressive multiple sclerosis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ethan W HollingsworthLaboratory for Neural Stem Cells and Functional Neurogenetics, Division of Neuroimmunology and Multiple Sclerosis, The Ohio State University Wexner Medical Center, Columbus, OH, USA.
Jacob E VaughnLaboratory for Neural Stem Cells and Functional Neurogenetics, Division of Neuroimmunology and Multiple Sclerosis, The Ohio State University Wexner Medical Center, Columbus, OH, USA.
Josh C OrackLaboratory for Neural Stem Cells and Functional Neurogenetics, Division of Neuroimmunology and Multiple Sclerosis, The Ohio State University Wexner Medical Center, Columbus, OH, USA.
Chelsea SkinnerLaboratory for Neural Stem Cells and Functional Neurogenetics, Division of Neuroimmunology and Multiple Sclerosis, The Ohio State University Wexner Medical Center, Columbus, OH, USA.
Jamil KhouriLaboratory for Neural Stem Cells and Functional Neurogenetics, Division of Neuroimmunology and Multiple Sclerosis, The Ohio State University Wexner Medical Center, Columbus, OH, USA.
Sofia B LizarragaDepartment of Biological Sciences, University of South Carolina, Columbia, SC, USA.
Mark E HesterCenter for Perinatal Research, The Research Institute at Nationwide Children's Hospital, Columbus, OH, USA.
Fumihiro WatanabeLaboratory for Neural Stem Cells and Functional Neurogenetics, Division of Neuroimmunology and Multiple Sclerosis, The Ohio State University Wexner Medical Center, Columbus, OH, USA.
Kenneth S KosikDepartment of Molecular Cellular and Developmental Biology, Neuroscience Research Institute, Biomolecular Science and Engineering Program, University of California, Santa Barbara, Santa Barbara, CA, USA.
Jaime ImitolaLaboratory for Neural Stem Cells and Functional Neurogenetics, Division of Neuroimmunology and Multiple Sclerosis, The Ohio State University Wexner Medical Center, Columbus, OH, USA info@iphemap.org.ORCID 0000-0003-2008-3133

Funding

South Carolina IDeA Networks of Biomedical Research (SC INBRE V)P20GM103499 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI EDIE C GOLDSMITH · 2012 to 2026
$61.0M
6 · The paper itself

Abstract

Disease modeling with induced pluripotent stem cells (iPSCs) is creating an abundance of phenotypic information that has become difficult to follow and interpret. Here, we report a systematic analysis of research practices and reporting bias in neurological disease models from 93 published articles. We find heterogeneity in current research practices and a reporting bias toward certain diseases. Moreover, we identified 663 CNS cell-derived phenotypes from 243 patients and 214 controls, which varied by mutation type and developmental stage

Indexed as

User-Computer InterfaceCell DifferentiationCluster AnalysisDatabases, FactualGenetic Association StudiesHumansInduced Pluripotent Stem CellsMeta-Analysis as TopicModels, BiologicalNervous System DiseasesTranscriptomeAlzheimer's diseaseiPSCsneurogeneticsneurological diseasesphenogenetics

Identifiers

PMID29051230
PMCPMC5731211

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.