ArticleGigaScience2017
Taxonomic structure and functional association of foxtail millet root microbiome.
Article in GigaScience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 60 papers, 1 of them a synthesis that pooled it.
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Who cites it
60 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Leveraging next-generation sequencing technology for the study of ginsenosides biosynthesis and exploring DNA markers in the endemic species Panax vietnamensis.Molecular biology reports · 2024Pooled it
- The functional structure of foxtail millet rhizoplane microbiome and its association with yield.Microbiology spectrum · 2026Article
- A probabilistic approach for predicting indole-3-acetic acid synthesis in bacteria using genomic data.BMC bioinformatics · 2026Article
- Soil acidification dismantles a citrulline-mediated microbe-metabolite-host defense axis in watermelon, exacerbating Fusarium wilt.NPJ biofilms and microbiomes · 2026Article
- Harnessing indigenous bacterial defenders to improve disease resistance and plant health in vegetableSustainable microbiology · 2026Review
- Small bowel metastatic SWI/SNF-deficient undifferentiated carcinoma may be predictive of lung primary-a rare presentation with novel SMARCA2 mutation findings in a study of three cases.Virchows Archiv : an international journal of pathology · 2025Article
- Enhancer hijacking drives FAM20C expression to promote papillary thyroid cancer progression.Cancer gene therapy · 2025Article
- Di (2-ethylhexyl) Phthalate decrease pregnancy rate via disrupting the microbe-gut-hypothalamic-pituitary-ovarian axis in mice.NPJ biofilms and microbiomes · 2025Article
- Multiplatform molecular analyses reveal two molecular subgroups of NF2-related schwannomatosis vestibular schwannomas with distinct tumour microenvironment and therapeutic vulnerabilities.Acta neuropathologica · 2025Article
- The role of soil chemical properties and microbial communities onFrontiers in microbiology · 2025Article
- Stochasticity-dominated rare fungal endophytes contribute to coexistence stability and saponin accumulation in Panax species.Environmental microbiome · 2024Article
- Diversity and Activity of Bacteria Cultured from a Cup-The SpongeMarine drugs · 2024Article
- Isolation and identification of vapA-absent Aeromonas salmonicida in diseased snakehead Channa argus in China.International microbiology : the official journal of the Spanish Society for Microbiology · 2024Article
- Interpretable machine learning decodes soil microbiome's response to drought stress.Environmental microbiome · 2024Article
- Dissecting the role of soybean rhizosphere-enriched bacterial taxa in modulating nitrogen-cycling functions.Applied microbiology and biotechnology · 2024Article
- Current Advances in the Functional Diversity and Mechanisms Underlying Endophyte-Plant Interactions.Microorganisms · 2024Review
- Root microbiota analysis ofMicrobiology spectrum · 2024Article
- Article
- Effects of intercropping teak withFrontiers in microbiology · 2024Article
- Soil, rhizosphere, and root microbiome in kiwifruit vine decline, an emerging multifactorial disease.Frontiers in microbiology · 2024Article
Corrections and comments
- Erratum issued
Authors and funding
31 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The root microbes play pivotal roles in plant productivity, nutrient uptakes, and disease resistance. The root microbial community structure has been extensively investigated by 16S/18S/ITS amplicons and metagenomic sequencing in crops and model plants. However, the functional associations between root microbes and host plant growth are poorly understood. This work investigates the root bacterial community of foxtail millet (Setaria italica) and its potential effects on host plant productivity. We determined the bacterial composition of 2882 samples from foxtail millet rhizoplane, rhizosphere and corresponding bulk soils from 2 well-separated geographic locations by 16S rRNA gene amplicon sequencing. We identified 16 109 operational taxonomic units (OTUs), and defined 187 OTUs as shared rhizoplane core OTUs. The β-diversity analysis revealed that microhabitat was the major factor shaping foxtail millet root bacterial community, followed by geographic locations. Large-scale association analysis identified the potential beneficial bacteria correlated with plant high productivity. Besides, the functional prediction revealed specific pathways enriched in foxtail millet rhizoplane bacterial community. We systematically described the root bacterial community structure of foxtail millet and found its core rhizoplane bacterial members. Our results demonstrated that host plants enrich specific bacteria and functions in the rhizoplane. The potentially beneficial bacteria may serve as a valuable knowledge foundation for bio-fertilizer development in agriculture.
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