Evidence map›Paper›PMID 29049317›Full record

ArticlePloS one2017

Identification of genome-wide targets of Olig2 in the adult mouse spinal cord using ChIP-Seq.

Andrew J Darr, Matt C Danzi, Lee Brady, Dorothea Emig-Agius, Amber Hackett, Roozbeh Golshani, Nikita Warner, Jae Lee, Vance P Lemmon, Pantelis Tsoulfas

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Regulators of Oligodendrocyte Differentiation.Cold Spring Harbor perspectives in biology · 2024
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
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  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Andrew J DarrThe Miami Project to Cure Paralysis, Miami, Florida, United States of America.
Matt C DanziThe Miami Project to Cure Paralysis, Miami, Florida, United States of America.
Lee BradyIllumina, Inc., San Diego, California, United States of America.
Dorothea Emig-AgiusIllumina, Inc., San Diego, California, United States of America.
Amber HackettThe Miami Project to Cure Paralysis, Miami, Florida, United States of America.
Roozbeh GolshaniIllumina, Inc., San Diego, California, United States of America.
Nikita WarnerIllumina, Inc., San Diego, California, United States of America.
Jae LeeThe Miami Project to Cure Paralysis, Miami, Florida, United States of America.
Vance P LemmonThe Miami Project to Cure Paralysis, Miami, Florida, United States of America.
Pantelis TsoulfasThe Miami Project to Cure Paralysis, Miami, Florida, United States of America.ORCID http://orcid.org/0000-0003-1974-6366
University of Miami · USIllumina (United States) · US

Funding

Novel Gene Targets for CNS Axonal RegenerationR01HD057632 · NICHD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BIXBY, JOHN L, LEMMON, VANCE P · 2007 to 2018
$4.7M
NICHD NIH HHS R01 HD057632
6 · The paper itself

Abstract

In jawed vertebrates, oligodendrocytes (OLs) are the myelin-producing glial cells responsible for ensheathment of axons within the central nervous system and are also crucial for remyelination following injury or disease. Olig2 is a crucial factor in the specification and differentiation of oligodendrocyte precursor cells (OPCs) that give rise to mature, myelin-producing OLs in the developing and postnatal CNS; however, its role in adulthood is less well understood. To investigate the role Olig2 plays in regulating gene expression in the adult OL lineage in a physiologically-relevant context, we performed chromatin immunoprecipitation followed by next generation sequencing analysis (ChIP-Seq) using whole spinal cord tissue harvested from adult mice. We found that many of the Olig2-bound sites were associated with genes with biological processes corresponding to OL differentiation (Nkx2.2, Nkx6.2, and Sip1), myelination and ensheathment (Mbp, Cldn11, and Mobp), as well as cell cycle and cytoskeletal regulation. This suggests Olig2 continues to play a critical role in processes related to OL differentiation and myelination well into adulthood.

Indexed as

GenomeAnimalsChromatin ImmunoprecipitationHomeobox Protein Nkx-2.2MaleMiceMice, Inbred C57BLMyelin SheathOligodendrocyte Transcription Factor 2Spinal CordHomeobox Protein Nkx-2.2Nkx2-2 protein, mouseOlig2 protein, mouseOligodendrocyte Transcription Factor 2

Identifiers

PMID29049317
PMCPMC5648140
OpenAlexW2765807992

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.