Evidence map›Paper›PMID 29047387›Full record

ArticleParasites & vectors2017

Isothermal diagnostic assays for the detection of soil-transmitted helminths based on the SmartAmp2 method.

Nour Rashwan, Aïssatou Diawara, Marilyn E Scott, Roger K Prichard

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 42 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Diagnostic Techniques for Soil-Transmitted Helminths - Recent Advances.Research and reports in tropical medicine · 2021
    Review
  11. Challenges and opportunities for the adoption of molecular diagnostics for anthelmintic resistance.International journal for parasitology. Drugs and drug resistance · 2020
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Whipworm and roundworm infections.Nature reviews. Disease primers · 2020
    Review
  17. Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Nour RashwanInstitute of Parasitology and Centre for Host-Parasite Interactions, Macdonald College, McGill University, Ste Anne de Bellevue, QC, Canada.
Aïssatou DiawaraBiology Program, Division of Science and Mathematics, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates.
Marilyn E ScottInstitute of Parasitology and Centre for Host-Parasite Interactions, Macdonald College, McGill University, Ste Anne de Bellevue, QC, Canada.
Roger K PrichardInstitute of Parasitology and Centre for Host-Parasite Interactions, Macdonald College, McGill University, Ste Anne de Bellevue, QC, Canada. roger.prichard@mcgill.ca.
McGill University · CAAl-Azhar University · EGNew York University Abu Dhabi · AE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDiagnosis of soil-transmitted helminths (STHs) has traditionally relied on stool microscopy, which has a number of critical deficiencies. Molecular diagnostics are powerful tools to identify closely related species, but the requirement for costly equipment makes their implementation difficult in low-resource or field settings. Rapid, sensitive and cost-effective diagnostic tools are crucial for accurate estimation of STH infection intensity in MDA programmes in which the goal is to reduce morbidity following repeated rounds of chemotherapy.

resultsIn this study, colourimetric isothermal assays were developed using SmartAmp2 primer sets and reagents in loop-mediated amplification (LAMP) assays. Species-specific primer sets, designed on a specific target sequence in the β-tubulin gene, were used to identify Necator americanus, Trichuris trichiura and Ascaris lumbricoides. After initial optimization on control plasmids and genomic DNA from adult worms, assays were evaluated on field samples. Assays showed high sensitivity and demonstrated high tolerance to inhibitors in spiked faecal samples. Rapid and sensitive colourimetric assays were successfully developed to identify the STHs in field samples using hydroxy napthol blue (HNB) dye.

conclusionsRapid and simple colourimetric diagnostic assays, using the SmartAmp2 method, were developed, with the potential to be applied in the field for detection of STH infections and the estimation of response to treatment. However, further validation on large numbers of field samples is needed.

Indexed as

AnimalsAscariasisAscaris lumbricoidesFecesFemaleHumansLarvaNecator americanusNecatoriasisNucleic Acid Amplification TechniquesOvumSoilSpecies SpecificityTrichuriasisTrichurisTubulinSoilTubulinIsothermal assayLampSmartAmp2Soil-transmitted helminthsSpecies-specificβ-tubulin gene

Identifiers

PMID29047387
PMCPMC5648480
OpenAlexW2765901796

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.