Evidence map›Paper›PMID 29046814›Full record

ArticleFungal biology and biotechnology2017

Emergence and loss of spliceosomal twin introns.

Michel Flipphi, Norbert Ág, Levente Karaffa, Napsugár Kavalecz, Gustavo Cerqueira, Claudio Scazzocchio, Erzsébet Fekete

Open access · goldAbstract read
In one paragraph

Article in Fungal biology and biotechnology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Michel FlipphiDepartment of Biochemical Engineering, University of Debrecen, Debrecen, 4032 Hungary.
Norbert ÁgDepartment of Biochemical Engineering, University of Debrecen, Debrecen, 4032 Hungary.
Levente KaraffaDepartment of Biochemical Engineering, University of Debrecen, Debrecen, 4032 Hungary.
Napsugár KavaleczDepartment of Biochemical Engineering, University of Debrecen, Debrecen, 4032 Hungary.
Gustavo CerqueiraBroad Institute of MIT and Harvard, Cambridge, MA USA.
Claudio ScazzocchioDepartment of Microbiology, Imperial College London, London, UK.
Erzsébet FeketeDepartment of Biochemical Engineering, University of Debrecen, Debrecen, 4032 Hungary.
University of Debrecen · HUBroad Institute · USInstitut de Biologie Intégrative de la Cellule · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn the primary transcript of nuclear genes, coding sequences-exons-usually alternate with non-coding sequences-introns. In the evolution of spliceosomal intron-exon structure, extant intron positions can be abandoned and new intron positions can be occupied. Spliceosomal twin introns ("stwintrons") are unconventional intervening sequences where a standard "internal" intron interrupts a canonical splicing motif of a second, "external" intron. The availability of genome sequences of more than a thousand species of fungi provides a unique opportunity to study spliceosomal intron evolution throughout a whole kingdom by means of molecular phylogenetics.

resultsA new stwintron was encountered in

conclusionsMolecular phylogeny of the peptide product was used to monitor the existence and fate of a stwintron in the transcripts of two neatly defined fungal genes, encoding well conserved proteins. Both defining events-stwintron emergence and loss-can be explained with extant models for intron insertion and loss. We thus demonstrate that stwintrons can serve as model systems to study spliceosomal intron evolution.

Indexed as

Aspergillus nidulansIntron gainIntron lossMolecular phylogeneticsPezizomycotinaSpliceosomal intron evolutionSpliceosomal twin introns

Identifiers

PMID29046814
PMCPMC5639578
OpenAlexW2764027472

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.