Evidence map›Paper›PMID 29046446›Full record

ArticleJournal of virology2018

Foamy Virus Vector Carries a Strong Insulator in Its Long Terminal Repeat Which Reduces Its Genotoxic Potential.

Michael Aaron Goodman, Paritha Arumugam, Devin Marie Pillis, Anastacia Loberg, Mohammed Nasimuzzaman, Danielle Lynn, Johannes Christiaan Maria van der Loo, Phillip Joseph Dexheimer, Mehdi Keddache, Thomas Roy Bauer and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Michael Aaron Goodman *Division of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Paritha Arumugam *Division of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Devin Marie PillisDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Anastacia LobergDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Mohammed NasimuzzamanDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Danielle LynnDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Johannes Christiaan Maria van der LooDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Phillip Joseph DexheimerDivision of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Mehdi KeddacheDivision of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Thomas Roy BauerCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Dennis Durand HicksteinCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
David William RussellDivision of Hematology, School of Medicine, University of Washington, Seattle, Washington, USA.
Punam MalikDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA Punam.Malik@cchmc.org.
Cincinnati Children's Hospital Medical Center · USCenter for Cancer Research · USNational Institutes of Health · USUniversity of Washington · US

Funding

Pediatric Scientist Development Program (PSDP) [K12]K12HD000850 · NICHD · YALE UNIVERSITY · PI Sallie R. Permar · 1987 to 2026
$44.1M
Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Alexander Miethke · 2007 to 2026
$24.4M
ROLE OF ANGPTL4, AN ANGIOGENIC MEDIATOR, IN ARTHRITISP30AR047363 · NIAMS · CINCINNATI CHILDRENS HOSP MED CTR · PI WAGNER, MICHAEL · 2001 to 2015
$9.2M
Hematopoietic Stem Cell Gene Therapy for Leukocyte Adhesion DeficiencyZIASC010384 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI HICKSTEIN, DENNIS · 2009 to 2025
$7.2M
Treatment of Leukocyte Adhesion Deficiency by Foamy Virus VectorsR01HL085107 · NHLBI · UNIVERSITY OF WASHINGTON · PI RUSSELL, DAVID W · 2006 to 2016
$4.2M
Cincinnati Center for Excellence in Molecular HematologyP30DK090971 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI ZHENG, YI · 2010 to 2015
$4.0M
NHLBI NIH HHS R01 HL085107NIAMS NIH HHS P30 AR047363NICHD NIH HHS K12 HD000850NIDDK NIH HHS P30 DK078392NIDDK NIH HHS P30 DK090971
6 · The paper itself

Abstract

Strong viral enhancers in gammaretrovirus vectors have caused cellular proto-oncogene activation and leukemia, necessitating the use of cellular promoters in "enhancerless" self-inactivating integrating vectors. However, cellular promoters result in relatively low transgene expression, often leading to inadequate disease phenotype correction. Vectors derived from foamy virus, a nonpathogenic retrovirus, show higher preference for nongenic integrations than gammaretroviruses/lentiviruses and preferential integration near transcriptional start sites, like gammaretroviruses. We found that strong viral enhancers/promoters placed in foamy viral vectors caused extremely low immortalization of primary mouse hematopoietic stem/progenitor cells compared to analogous gammaretrovirus/lentivirus vectors carrying the same enhancers/promoters, an effect not explained solely by foamy virus' modest insertional site preference for nongenic regions compared to gammaretrovirus/lentivirus vectors. Using CRISPR/Cas9-mediated targeted insertion of analogous proviral sequences into the

Indexed as

Genetic VectorsInsulator ElementsTerminal Repeat SequencesAdaptor Proteins, Signal TransducingAnimalsCells, CulturedCRISPR-Cas SystemsGenetic TherapyHematopoietic Stem CellsLIM Domain ProteinsMiceMutagenesis, InsertionalMutagenicity TestsProto-Oncogene MasSpumavirusTransduction, GeneticAdaptor Proteins, Signal TransducingLIM Domain ProteinsLmo2 protein, mouseMAS1 protein, humanProto-Oncogene MasCCCTC-binding factor (CTCF)CRISPR/Casfoamy virusgene insulatorgene therapygenotoxicity

Identifiers

PMID29046446
PMCPMC5730768
OpenAlexW2766613035

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.