Evidence map›Paper›PMID 29045755›Full record

ArticleNucleic acids research2018

The TriForC database: a comprehensive up-to-date resource of plant triterpene biosynthesis.

Karel Miettinen, Sabrina Iñigo, Lukasz Kreft, Jacob Pollier, Christof De Bo, Alexander Botzki, Frederik Coppens, Søren Bak, Alain Goossens

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 69 citations in OpenAlex.

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  8. Review
  9. Enzyme Databases in the Era of Omics and Artificial Intelligence.International journal of molecular sciences · 2023
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  12. Review
  13. Article
  14. Developing TeroENZ and TeroMAP modules for the terpenome research platform TeroKit.Database : the journal of biological databases and curation · 2023
    Article
  15. Article
  16. Article
  17. Review
  18. Characterization of Saponins from Various Parts ofMolecules (Basel, Switzerland) · 2021
    Article
  19. The genome ofGigaByte (Hong Kong, China) · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Karel MiettinenGhent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium.
Sabrina IñigoGhent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium.
Lukasz KreftVIB Bioinformatics Core, 9052 Ghent, Belgium.
Jacob PollierGhent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium.
Christof De BoVIB Bioinformatics Core, 9052 Ghent, Belgium.
Alexander BotzkiVIB Bioinformatics Core, 9052 Ghent, Belgium.
Frederik CoppensGhent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium.
Søren BakPlant Biochemistry Laboratory and Villum Research Center 'Plant Plasticity', Copenhagen Plant Science Center, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark.
Alain GoossensGhent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium.
Ghent University · BEUniversity of Copenhagen · DKVIB-UGent Center for Plant Systems Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Triterpenes constitute a large and important class of plant natural products with diverse structures and functions. Their biological roles range from membrane structural components over plant hormones to specialized plant defence compounds. Furthermore, triterpenes have great potential for a variety of commercial applications such as vaccine adjuvants, anti-cancer drugs, food supplements and agronomic agents. Their biosynthesis is carried out through complicated, branched pathways by multiple enzyme types that include oxidosqualene cyclases, cytochrome P450s, and UDP-glycosyltransferases. Given that the number of characterized triterpene biosynthesis enzymes has been growing fast recently, the need for a database specifically focusing on triterpene enzymology became eminent. Here, we present the TriForC database (http://bioinformatics.psb.ugent.be/triforc/), encompassing a comprehensive catalogue of triterpene biosynthesis enzymes. This highly interlinked database serves as a user-friendly access point to versatile data sets of enzyme and compound features, enabling the scanning of a complete catalogue of experimentally validated triterpene enzymes, their substrates and products, as well as the pathways they constitute in various plant species. The database can be accessed by direct browsing or through convenient search tools including keyword, BLAST, plant species and substructure options. This database will facilitate gene mining and creating genetic toolboxes for triterpene synthetic biology.

Indexed as

Databases, FactualBiological ProductsBiosynthetic PathwaysDatabases, ChemicalDatabases, ProteinEnzymesPhylogenyPlant ProteinsPlantsSearch EngineSubstrate SpecificitySystems BiologyTriterpenesBiological ProductsEnzymesPlant ProteinsTriterpenes

Identifiers

PMID29045755
PMCPMC5753214
OpenAlexW2765513824

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.