Evidence map›Paper›PMID 29045691›Full record

ArticleJournal of experimental botany2017

Genetic dissection of Arabidopsis MAP kinase phosphatase 1-dependent PAMP-induced transcriptional responses.

Lingyan Jiang, Ying Wan, Jeffrey C Anderson, Jie Hou, Soliman M Islam, Jianlin Cheng, Scott C Peck

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. PROTEIN PHOSPHATASE 2A-B'Plant physiology · 2020
    Article
  7. The Lifecycle of the Plant Immune System.Critical reviews in plant sciences · 2020
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Lingyan JiangDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
Ying WanDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
Jeffrey C AndersonDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
Jie HouDepartment of Computer Science, University of Missouri, Columbia, MO, USA.
Soliman M IslamDepartment of Computer Science, University of Missouri, Columbia, MO, USA.
Jianlin ChengDepartment of Computer Science, University of Missouri, Columbia, MO, USA.
Scott C PeckDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
University of Missouri · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant immunity is initiated by extracellular detection of pathogen-associated molecular patterns (PAMPs) through surface-localized pattern recognition receptors (PRRs). PRR activation induces many responses including the activation of mitogen-activated protein kinases (MAPKs) that ultimately limit bacterial growth. Previous work identified Arabidopsis MAP kinase phosphatase 1 (MKP1) as a negative regulator of signaling pathways required for some, but not all, of PAMP-initiated responses. Specifically, loss of MAPK MPK6 in an mkp1 background suppressed a subset of the mkp1-dependent biological phenotypes, indicating the requirement for MPK6 in MKP1-dependent signaling. To further genetically separate the outputs of PAMP-responsive signaling pathways, we performed a transcriptome analysis in Arabidopsis wild type, mkp1 and mkp1 mpk6 seedlings treated with the bacterially derived PAMP elf26 for 0, 30, and 90 min. Using differential genetic and temporal clustering analyses between and within genotypes, we identified and separated 6963 elf26-responsive transcripts based on both genetic requirements of MKP1 (with or without a requirement for MPK6) and temporal transcriptional accumulation patterns, and some of these novel response markers were validated by qRT-PCR over a more extended time course. Taken together, our transcriptome analysis provides novel information for delineating PAMP signaling pathways.

Indexed as

Signal TransductionTranscriptomeArabidopsisArabidopsis ProteinsCluster AnalysisGene OntologyMitogen-Activated Protein KinasesPathogen-Associated Molecular Pattern MoleculesPlant ImmunityProtein Tyrosine PhosphatasesReceptors, Pattern RecognitionSeedlingsSequence Analysis, RNAArabidopsis ProteinsMitogen-Activated Protein KinasesMKP1 protein, ArabidopsisMPK6 protein, ArabidopsisPathogen-Associated Molecular Pattern MoleculesProtein Tyrosine PhosphatasesReceptors, Pattern RecognitionArabidopsismitogen-activated protein kinaseMKP1MPK6pathogen-associated molecular pattern (PAMP)phosphataseRNAseqtranscriptome

Identifiers

PMID29045691
PMCPMC5853853
OpenAlexW2763341242

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.