Evidence map›Paper›PMID 29045470›Full record

ArticlePloS one2017

Structural and functional analysis of SMO-1, the SUMO homolog in Caenorhabditis elegans.

Parag Surana, Chandrakala M Gowda, Vasvi Tripathi, Limor Broday, Ranabir Das

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Parag SuranaNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India.ORCID http://orcid.org/0000-0002-9191-3985
Chandrakala M GowdaNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India.
Vasvi TripathiNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India.
Limor BrodayDepartment of Cell and Developmental Biology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Ranabir DasNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India.ORCID http://orcid.org/0000-0001-5114-6817
Tata Institute of Fundamental Research · INTel Aviv University · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SUMO proteins are important post-translational modifiers involved in multiple cellular pathways in eukaryotes, especially during the different developmental stages in multicellular organisms. The nematode C. elegans is a well known model system for studying metazoan development and has a single SUMO homolog, SMO-1. Interestingly, SMO-1 modification is linked to embryogenesis and development in the nematode. However, high-resolution information about SMO-1 and the mechanism of its conjugation is lacking. In this work, we report the high-resolution three dimensional structure of SMO-1 solved by NMR spectroscopy. SMO-1 has flexible N-terminal and C-terminal tails on either side of a rigid beta-grasp folded core. While the sequence of SMO-1 is more similar to SUMO1, the electrostatic surface features of SMO-1 resemble more with SUMO2/3. SMO-1 can bind to typical SUMO Interacting Motifs (SIMs). SMO-1 can also conjugate to a typical SUMOylation consensus site as well as to its natural substrate HMR-1. Poly-SMO-1 chains were observed in-vitro even though SMO-1 lacks any consensus SUMOylation site. Typical deSUMOylation enzymes like Senp2 can cleave the poly-SMO-1 chains. Despite being a single gene, the SMO-1 structure allows it to function in a large repertoire of signaling pathways involving SUMO in C. elegans. Structural and functional features of SMO-1 studies described here will be useful to understand its role in development.

Indexed as

Sequence Homology, Amino AcidAmino Acid SequenceAnimalsCadherinsCaenorhabditis elegansCaenorhabditis elegans ProteinsMagnetic Resonance SpectroscopyModels, MolecularProtein BindingProtein Interaction Domains and MotifsSolutionsStatic ElectricitySUMO-1 ProteinSumoylationTime FactorsCadherinsCaenorhabditis elegans ProteinsSolutionsSUMO-1 Protein

Identifiers

PMID29045470
PMCPMC5646861
OpenAlexW2766519977

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.