Evidence map›Paper›PMID 29045141›Full record

ArticleBiochemistry2017

Internal Motions of Basic Side Chains of the Antennapedia Homeodomain in the Free and DNA-Bound States.

Dan Nguyen, Zoe A Hoffpauir, Junji Iwahara

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Hindered Rotations of Protein Asparagine/Glutamine Side-Chain NHThe journal of physical chemistry letters · 2021
    Article
  5. De novo determination of near-surface electrostatic potentials by NMR.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Mobility of Histidine Side Chains Analyzed withThe journal of physical chemistry. B · 2019
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Impact of two-bondJournal of biomolecular NMR · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Dan NguyenDepartment of Biochemistry & Molecular Biology, Sealy Center for Structural Biology & Molecular Biophysics, University of Texas Medical Branch , Galveston, Texas 77555, United States.
Zoe A HoffpauirDepartment of Biochemistry & Molecular Biology, Sealy Center for Structural Biology & Molecular Biophysics, University of Texas Medical Branch , Galveston, Texas 77555, United States.
Junji IwaharaDepartment of Biochemistry & Molecular Biology, Sealy Center for Structural Biology & Molecular Biophysics, University of Texas Medical Branch , Galveston, Texas 77555, United States.ORCID 0000-0003-4732-2173
The University of Texas Medical Branch at Galveston · US

Funding

HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
Characterizing the ion-pair dynamics and their roles in protein-DNA associationR01GM105931 · NIGMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI IWAHARA, JUNJI · 2014 to 2017
$1.1M
NIGMS NIH HHS R01 GM105931NIGMS NIH HHS T32 GM008280
6 · The paper itself

Abstract

Basic side chains play crucial roles in protein-DNA interactions. In this study, using NMR spectroscopy, we investigated the dynamics of Arg and Lys side chains of the fruit fly Antennapedia homeodomain in the free state and in the complex with target DNA. We measured

Indexed as

Molecular Dynamics SimulationMotionAnimalsAntennapedia Homeodomain ProteinArginineBinding SitesDNADNA-Binding ProteinsDrosophilaDrosophila ProteinsEntropyHydrogen BondingLysineModels, MolecularNuclear Magnetic Resonance, BiomolecularAntennapedia Homeodomain ProteinAntp protein, DrosophilaArginineDNADNA-Binding ProteinsDrosophila ProteinsLysine

Identifiers

PMID29045141
PMCPMC5682595
OpenAlexW2765630143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.