Evidence map›Paper›PMID 29044207›Full record

ArticleNature communications2017

Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing.

Sandra Romero-Hidalgo, Adrián Ochoa-Leyva, Alejandro Garcíarrubio, Victor Acuña-Alonzo, Erika Antúnez-Argüelles, Martha Balcazar-Quintero, Rodrigo Barquera-Lozano, Alessandra Carnevale, Fernanda Cornejo-Granados, Juan Carlos Fernández-López and 21 more

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  13. Somatic Mutational Landscape in Mexican Patients:International journal of molecular sciences · 2022
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  19. Interaction of HLA Class II rs9272219 andFrontiers in genetics · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Sandra Romero-HidalgoInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.ORCID http://orcid.org/0000-0003-3077-7825
Adrián Ochoa-LeyvaInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Alejandro GarcíarrubioInstituto de Biotecnología, Universidad Nacional Autónoma de México (UNAM), Cuernavaca, Morelos, 62210, Mexico.
Victor Acuña-AlonzoEscuela Nacional de Antropología e Historia, Mexico City, 14030, Mexico.
Erika Antúnez-ArgüellesInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Martha Balcazar-QuinteroDirección de Formación y Acción Social, Universidad Iberoamericana, Mexico City, 01298, Mexico.
Rodrigo Barquera-LozanoEscuela Nacional de Antropología e Historia, Mexico City, 14030, Mexico.ORCID http://orcid.org/0000-0003-0518-4518
Alessandra CarnevaleInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Fernanda Cornejo-GranadosInstituto de Biotecnología, Universidad Nacional Autónoma de México (UNAM), Cuernavaca, Morelos, 62210, Mexico.
Juan Carlos Fernández-LópezInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Rodrigo García-HerreraInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.ORCID http://orcid.org/0000-0002-7972-5746
Humberto García-OrtízInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Ángeles Granados-SilvestreFacultad de Química, UNAM, Mexico City, 04510, Mexico.
Julio GranadosInstituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Mexico City, 14080, Mexico.
Fernando Guerrero-RomeroUnidad de Investigación Biomédica, Instituto Mexicano del Seguro Social, Durango, 34067, Mexico.
Enrique Hernández-LemusInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.ORCID http://orcid.org/0000-0002-1872-1397
Paola León-MimilaInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Gastón Macín-PérezEscuela Nacional de Antropología e Historia, Mexico City, 14030, Mexico.
Angélica Martínez-HernándezInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Marta MenjivarInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Enrique MorettInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Lorena OrozcoInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Guadalupe Ortíz-LópezHospital Juárez de México, Mexico City, 07760, Mexico.
Fernando Pérez-VillatoroInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Javier Rivera-MoralesEscuela Nacional de Antropología e Historia, Mexico City, 14030, Mexico.
Fernando Riveros-McKayInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Marisela Villalobos-ComparánInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Hugo Villamil-RamírezInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Teresa Villarreal-MolinaInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico.
Samuel Canizales-QuinterosInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico. cani@unam.mx.
Xavier SoberónInstituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico. xsoberon@inmegen.gob.mx.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the genetic structure of Native American populations is important to clarify their diversity, demographic history, and to identify genetic factors relevant for biomedical traits. Here, we show a demographic history reconstruction from 12 Native American whole genomes belonging to six distinct ethnic groups representing the three main described genetic clusters of Mexico (Northern, Southern, and Maya). Effective population size estimates of all Native American groups remained below 2,000 individuals for up to 10,000 years ago. The proportion of missense variants predicted as damaging is higher for undescribed (~ 30%) than for previously reported variants (~ 15%). Several variants previously associated with biological traits are highly frequent in the Native American genomes. These findings suggest that the demographic and adaptive processes that occurred in these groups shaped their genetic architecture and could have implications in biological processes of the Native Americans and Mestizos of today.

Indexed as

Genetic VariationEthnicityGene FrequencyGenetics, PopulationGenome, HumanGenotypeHuman MigrationHumansMexicoModels, GeneticTime Factors

Identifiers

PMID29044207
PMCPMC5647344

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.