Evidence map›Paper›PMID 29044188›Full record

ArticleScientific reports2017

The histone variant H3.3 G34W substitution in giant cell tumor of the bone link chromatin and RNA processing.

Jinyeong Lim, Joo Hyun Park, Annika Baude, Yeongran Yoo, Yeon Kyu Lee, Christopher R Schmidt, Jong Bae Park, Jörg Fellenberg, Josef Zustin, Florian Haller and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 55 citations in OpenAlex.

  1. Case Report: Identification of rareFrontiers in oncology · 2026
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  10. Histone mutations in cancer.Biochemical Society transactions · 2023
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  12. Inhibition of RANKL Expression in Osteocyte-like Differentiated Tumor Cells in Giant Cell Tumor of Bone After Denosumab Treatment.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2023
    Article
  13. Article
  14. Review
  15. Oncohistones: Hijacking the histone code.Annual review of cancer biology · 2022
    Article
  16. Review
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Jinyeong LimGraduate School of Cancer Science and Policy, Cancer Biomedical Science, National Cancer Center, Gyeonggi-do, Republic of Korea.
Joo Hyun ParkMetabolism and Epigenetics Laboratory, Department of Nutritional Science and Food Management, Ewha Womans University, Seoul, Republic of Korea.
Annika BaudeDivision of Epigenomics and Cancer Risk Factors, German Cancer Research Center, Heidelberg, Germany.
Yeongran YooGraduate School of Cancer Science and Policy, Cancer Biomedical Science, National Cancer Center, Gyeonggi-do, Republic of Korea.
Yeon Kyu LeeMetabolism and Epigenetics Laboratory, Department of Nutritional Science and Food Management, Ewha Womans University, Seoul, Republic of Korea.
Christopher R SchmidtDivision of Epigenomics and Cancer Risk Factors, German Cancer Research Center, Heidelberg, Germany.
Jong Bae ParkGraduate School of Cancer Science and Policy, Cancer Biomedical Science, National Cancer Center, Gyeonggi-do, Republic of Korea.
Jörg FellenbergResearch Center for Experimental Orthopedics, Clinic for Orthopedic and Trauma Surgery, University of Heidelberg, Heidelberg, Germany.
Josef ZustinDepartment of Orthopaedics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Florian HallerInstitute of Pathology, University Hospital Erlangen, Erlangen, Germany.
Irene KrückenInstitute of Pathology, University of Leipzig, Leipzig, Germany.
Hyun Guy KangGraduate School of Cancer Science and Policy, Cancer Biomedical Science, National Cancer Center, Gyeonggi-do, Republic of Korea.
Yoon Jung ParkMetabolism and Epigenetics Laboratory, Department of Nutritional Science and Food Management, Ewha Womans University, Seoul, Republic of Korea.
Christoph PlassDivision of Epigenomics and Cancer Risk Factors, German Cancer Research Center, Heidelberg, Germany. c.plass@Dkfz-Heidelberg.de.
Anders M LindrothGraduate School of Cancer Science and Policy, Cancer Biomedical Science, National Cancer Center, Gyeonggi-do, Republic of Korea. lindroth@ncc.re.kr.
Ewha Womans University · KRNational Cancer Center · KREpigenomics (Germany) · DEHeidelberg University · DELeipzig University · DEUniversitätsklinikum Erlangen · DEUniversity Medical Center Hamburg-Eppendorf · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While transcription as regulated by histones and their post-translational modifications has been well described, the function of histone variants in this process remains poorly characterized. Potentially important insight into this process pertain to the frequently occurring mutations of H3.3, leading to G34 substitutions in childhood glioblastoma and giant cell tumor of the bone (GCTB). In this study, we have established primary cell lines from GCTB patients and used them to uncover the influence of H3.3 G34W substitutions on cellular growth behavior, gene expression, and chromatin compaction. Primary cell lines with H3.3 G34W showed increased colony formation, infiltration and proliferation, known hallmarks of tumor development. Isogenic cell lines with H3.3 G34W recapitulated the increased proliferation observed in primary cells. Transcriptomic analysis of primary cells and tumor biopsies revealed slightly more downregulated gene expression, perhaps by increased chromatin compaction. We identified components related to splicing, most prominently hnRNPs, by immunoprecipitation and mass spectrometry that specifically interact with H3.3 G34W in the isogenic cell lines. RNA-sequencing analysis and hybridization-based validations further enforced splicing aberrations. Our data uncover a role for H3.3 in RNA processing and chromatin modulation that is blocked by the G34W substitution, potentially driving the tumorigenic process in GCTB.

Indexed as

Amino Acid SubstitutionMutationRNA Processing, Post-TranscriptionalBone NeoplasmsCarrier ProteinsCell Line, TumorChromatinChromatography, LiquidComputational BiologyFemaleGene Expression ProfilingGiant Cell Tumor of BoneHigh-Throughput Nucleotide SequencingHistonesHumansMaleCarrier ProteinsChromatinHistones

Identifiers

PMID29044188
PMCPMC5647428
OpenAlexW2762651048

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.