Evidence map›Paper›PMID 29043977›Full record

ArticleeLife2017

A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis.

Ajay Mishra, Bénédicte Oulès, Angela Oliveira Pisco, Tony Ly, Kifayathullah Liakath-Ali, Gernot Walko, Priyalakshmi Viswanathan, Matthieu Tihy, Jagdeesh Nijjher, Sara-Jane Dunn and 2 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
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  10. Aging and obesity prime the methylome and transcriptome of adipose stem cells for disease and dysfunction.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Understanding Human Epidermal Stem Cells at Single-Cell Resolution.The Journal of investigative dermatology · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Ajay Mishra *Centre for Stem Cells and Regenerative Medicine, King's College London, London, United Kingdom.
Bénédicte Oulès *Centre for Stem Cells and Regenerative Medicine, King's College London, London, United Kingdom.
Angela Oliveira Pisco *Centre for Stem Cells and Regenerative Medicine, King's College London, London, United Kingdom.ORCID http://orcid.org/0000-0003-0142-2355
Tony Ly *Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, United Kingdom.
Kifayathullah Liakath-Ali *Centre for Stem Cells and Regenerative Medicine, King's College London, London, United Kingdom.
Gernot WalkoCentre for Stem Cells and Regenerative Medicine, King's College London, London, United Kingdom.
Priyalakshmi ViswanathanCentre for Stem Cells and Regenerative Medicine, King's College London, London, United Kingdom.
Matthieu TihyCentre for Stem Cells and Regenerative Medicine, King's College London, London, United Kingdom.ORCID http://orcid.org/0000-0002-9314-4657
Jagdeesh NijjherCentre for Stem Cells and Regenerative Medicine, King's College London, London, United Kingdom.
Sara-Jane DunnMicrosoft Research, Cambridge, United Kingdom.
Angus I LamondCentre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, United Kingdom.ORCID http://orcid.org/0000-0001-6204-6045
Fiona M WattCentre for Stem Cells and Regenerative Medicine, King's College London, London, United Kingdom.ORCID http://orcid.org/0000-0001-9151-5154
Guy's Hospital · GBUniversity of Dundee · GBKing's College London · GB

Funding

Department of HealthMedical Research Council G1100073Wellcome TrustWellcome Trust 096540/Z/11/ZWellcome Trust 108058/Z/15/Z
6 · The paper itself

Abstract

Epidermal homeostasis depends on a balance between stem cell renewal and terminal differentiation. The transition between the two cell states, termed commitment, is poorly understood. Here, we characterise commitment by integrating transcriptomic and proteomic data from disaggregated primary human keratinocytes held in suspension to induce differentiation. Cell detachment induces several protein phosphatases, five of which - DUSP6, PPTC7, PTPN1, PTPN13 and PPP3CA - promote differentiation by negatively regulating ERK MAPK and positively regulating AP1 transcription factors. Conversely, DUSP10 expression antagonises commitment. The phosphatases form a dynamic network of transient positive and negative interactions that change over time, with DUSP6 predominating at commitment. Boolean network modelling identifies a mandatory switch between two stable states (stem and differentiated) via an unstable (committed) state. Phosphatase expression is also spatially regulated in vivo and in vitro. We conclude that an auto-regulatory phosphatase network maintains epidermal homeostasis by controlling the onset and duration of commitment.

Indexed as

Cell DifferentiationGene Expression RegulationCells, CulturedGene Expression ProfilingHumansKeratinocytesPhosphoprotein PhosphatasesProteomePhosphoprotein PhosphatasesProteomeBoolean networkscommitmentcomputational biologydevelopmental biologydifferentiationepidermishumanprotein dephosphorylationstem cellssystems biology

Identifiers

PMID29043977
PMCPMC5667932
OpenAlexW2952888409

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.