Evidence map›Paper›PMID 29043062›Full record

ArticleF1000Research2017

The future of metabolomics in ELIXIR.

Merlijn van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez, Warwick B Dunn, Timothy M D Ebbels, Franck Giacomoni, Alejandra Gonzalez-Beltran, Thomas Hankemeier and 30 more

Abstract read
In one paragraph

Article in F1000Research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Trial
  2. Review
  3. Article
  4. Emerging technologies and their impact on regulatory science.Experimental biology and medicine (Maywood, N.J.) · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Merlijn van RijswijkELIXIR-NL, Dutch Techcentre for Life Sciences, Utrecht, 3503 RM, Netherlands.ORCID https://orcid.org/0000-0002-1067-7766
Charlie BeirnaertADReM, Department of Mathematics and Computer Science, University of Antwerp, Antwerp, 2020, Belgium.ORCID https://orcid.org/0000-0003-3007-2569
Christophe CaronELIXIR-FR, French Institute of Bioinformatics, Gif-sur-Yvette, F-91198, France.
Marta CascanteDepartment of Biochemistry and Molecular Biomedicine, Faculty of Biology, Universitat de Barcelona, Barcelona, 08028, Spain.
Victoria DominguezELIXIR-FR, French Institute of Bioinformatics, Gif-sur-Yvette, F-91198, France.
Warwick B DunnSchool of Biosciences, Phenome Centre Birmingham and Birmingham Metabolomics Training Centre, University of Birmingham, Birmingham, B15 2TT, UK.
Timothy M D EbbelsComputational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, London, SW7 2AZ, UK.
Franck GiacomoniINRA, UNH, Human Nutrition Unit, PFEM, Metabolism Exploration Platform, MetaboHUB-Clermont, Clermont Auvergne University, Clermont-Ferrand, F-63000, France.
Alejandra Gonzalez-BeltranOxford e-Research Centre, Engineering Science Department, University of Oxford, Oxford, OX1 3QG, UK.ORCID https://orcid.org/0000-0003-3499-8262
Thomas HankemeierNetherlands Metabolomics Center, Leiden, 2333 CC, Netherlands.
Kenneth HaugEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, CB10 1SD, UK.ORCID https://orcid.org/0000-0003-3168-4145
Jose L Izquierdo-GarciaCentro Nacional Investigaciones Cardiovasculares, Madrid, 28029, Spain.
Rafael C JimenezELIXIR Hub, Cambridge, CB10 1SD, UK.ORCID https://orcid.org/0000-0001-5404-7670
Fabien JourdanToxalim, UMR 1331, Université de Toulouse, Toulouse, F-31300, France.
Namrata KaleEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, CB10 1SD, UK.ORCID https://orcid.org/0000-0002-4255-8104
Maria I KlapaMetabolic Engineering and Systems Biology Laboratory, Institute of Chemical Engineering Sciences, Foundation for Research & Technology - Hellas (FORTH/ICE-HT), Patras, GR-26504, Greece.ORCID https://orcid.org/0000-0002-2047-3185
Oliver KohlbacherBiomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, 72076, Germany.
Kairi KoortThe Centre of Excellence in Neural and Behavioural Sciences, Tallinn, Tallinn, 10120, Estonia.
Kim KultimaDepartment of Medical Sciences, Uppsala University, Uppsala, 752 36, Sweden.
Gildas Le CorguilléELIXIR-FR, French Institute of Bioinformatics, Gif-sur-Yvette, F-91198, France.
Pablo MorenoEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, CB10 1SD, UK.
Nicholas K MoschonasMetabolic Engineering and Systems Biology Laboratory, Institute of Chemical Engineering Sciences, Foundation for Research & Technology - Hellas (FORTH/ICE-HT), Patras, GR-26504, Greece.ORCID https://orcid.org/0000-0002-2556-537X
Steffen NeumannDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Halle, 06120, Germany.
Claire O'DonovanEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, CB10 1SD, UK.
Martin ReczkoBSRC "Alexander Fleming", Athens, GR-16672, Greece.
Philippe Rocca-SerraOxford e-Research Centre, Engineering Science Department, University of Oxford, Oxford, OX1 3QG, UK.
Antonio RosatoMagnetic Resonance Center, Interuniversity Consortium for Magnetic Resonance on MetalloProteins, University of Florence, Florence, 50121, Italy.ORCID https://orcid.org/0000-0001-6172-0368
Reza M SalekEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, CB10 1SD, UK.ORCID https://orcid.org/0000-0001-8604-1732
Susanna-Assunta SansoneOxford e-Research Centre, Engineering Science Department, University of Oxford, Oxford, OX1 3QG, UK.ORCID https://orcid.org/0000-0001-5306-5690
Venkata SatagopamLuxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Belvaux, L-4367, Luxembourg.
Daniel SchoberDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Halle, 06120, Germany.ORCID https://orcid.org/0000-0001-8014-6648
Ruth ShimmoThe Centre of Excellence in Neural and Behavioural Sciences, Tallinn, Tallinn, 10120, Estonia.
Rachel A SpicerEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, CB10 1SD, UK.ORCID https://orcid.org/0000-0002-2807-8796
Ola SpjuthDepartment of Pharmaceutical Biosciences, Uppsala University, Uppsala, 752 36, Sweden.ORCID https://orcid.org/0000-0002-8083-2864
Etienne A ThévenotCEA, LIST, Laboratory for Data Analysis and Systems' Intelligence, MetaboHUB, Gif-sur-Yvette, F-91191, France.ORCID https://orcid.org/0000-0003-1019-4577
Mark R ViantSchool of Biosciences, Phenome Centre Birmingham and Birmingham Metabolomics Training Centre, University of Birmingham, Birmingham, B15 2TT, UK.
Ralf J M WeberSchool of Biosciences, Phenome Centre Birmingham and Birmingham Metabolomics Training Centre, University of Birmingham, Birmingham, B15 2TT, UK.
Egon L WillighagenDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, NL-6200, Netherlands.ORCID https://orcid.org/0000-0001-7542-0286
Gianluigi ZanettiCRS4, Data Intensive Computing Group, Ed.1 POLARIS, Pula, 09010, Italy.
Christoph SteinbeckFriedrich-Schiller-University, Jena, 07743, Germany.ORCID https://orcid.org/0000-0001-6966-0814

Funding

Biotechnology and Biological Sciences Research Council BB/H024921/1Biotechnology and Biological Sciences Research Council BB/I000771/1Medical Research Council MR/M009157/1
6 · The paper itself

Abstract

Metabolomics, the youngest of the major omics technologies, is supported by an active community of researchers and infrastructure developers across Europe. To coordinate and focus efforts around infrastructure building for metabolomics within Europe, a workshop on the "Future of metabolomics in ELIXIR" was organised at Frankfurt Airport in Germany. This one-day strategic workshop involved representatives of ELIXIR Nodes, members of the PhenoMeNal consortium developing an e-infrastructure that supports workflow-based metabolomics analysis pipelines, and experts from the international metabolomics community. The workshop established

Indexed as

bioinformatics infrastructurecloud computingcomputational workflowsdatabasesdata standardsmetabolomicsmulti-omics approachestraining

Identifiers

PMID29043062
PMCPMC5627583

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.