Evidence map›Paper›PMID 29042546›Full record

ArticleNature communications2017

Anomeric memory of the glycosidic bond upon fragmentation and its consequences for carbohydrate sequencing.

Baptiste Schindler, Loïc Barnes, Gina Renois, Christopher Gray, Stéphane Chambert, Sébastien Fort, Sabine Flitsch, Claire Loison, Abdul-Rahman Allouche, Isabelle Compagnon

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 120 citations in OpenAlex.

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  15. Identification of Mobility-ResolvedAnalytical chemistry · 2022
    Article
  16. Review
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  18. Review
  19. Article
  20. Glycoprotein molecular dynamics analysis: SARS-CoV-2 spike glycoprotein case study.Advances in protein chemistry and structural biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Baptiste SchindlerUniversité de Lyon, F-69622, Lyon, France.ORCID http://orcid.org/0000-0002-7376-4154
Loïc BarnesUniversité de Lyon, F-69622, Lyon, France.
Gina RenoisUniversité de Lyon, F-69622, Lyon, France.
Christopher GraySchool of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.
Stéphane ChambertUniversité de Lyon, F-69622, Lyon, France.
Sébastien FortUniversité de Grenoble Alpes, CERMAV, F-38000, Grenoble, France.
Sabine FlitschSchool of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.
Claire LoisonUniversité de Lyon, F-69622, Lyon, France.
Abdul-Rahman AlloucheUniversité de Lyon, F-69622, Lyon, France.ORCID http://orcid.org/0000-0003-0725-4057
Isabelle CompagnonUniversité de Lyon, F-69622, Lyon, France. isabelle.compagnon@univ-lyon1.fr.
Université Claude Bernard Lyon 1 · FRUniversity of Manchester · GBCentre National de la Recherche Scientifique · FR

Funding

Biotechnology and Biological Sciences Research Council BB/K00199X/1
6 · The paper itself

Abstract

Deciphering the carbohydrate alphabet is problematic due to its unique complexity among biomolecules. Strikingly, routine sequencing technologies-which are available for proteins and DNA and have revolutionised biology-do not exist for carbohydrates. This lack of structural tools is identified as a crucial bottleneck, limiting the full development of glycosciences and their considerable potential impact for the society. In this context, establishing generic carbohydrate sequencing methods is both a major scientific challenge and a strategic priority. Here we show that a hybrid analytical approach integrating molecular spectroscopy with mass spectrometry provides an adequate metric to resolve carbohydrate isomerisms, i.e the monosaccharide content, anomeric configuration, regiochemistry and stereochemistry of the glycosidic linkage. On the basis of the spectroscopic discrimination of MS fragments, we report the unexpected demonstration of the anomeric memory of the glycosidic bond upon fragmentation. This remarkable property is applied to de novo sequencing of underivatized oligosaccharides.Establishing generic carbohydrate sequencing methods is both a major scientific challenge and a strategic priority. Here the authors show a hybrid analytical approach integrating molecular spectroscopy and mass spectrometry to resolve carbohydrate isomerism, anomeric configuration, regiochemistry and stereochemistry.

Indexed as

Carbohydrate ConformationCarbohydrate SequenceGlycosidesIsomerismMass SpectrometryOligosaccharidesSequence AnalysisGlycosidesOligosaccharides

Identifiers

PMID29042546
PMCPMC5645458
OpenAlexW2762757323

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.