Evidence map›Paper›PMID 29038916›Full record

ArticlePlant molecular biology2017

Functional characterization of chloroplast-targeted RbgA GTPase in higher plants.

Young Jeon, Hee-Kyung Ahn, Yong Won Kang, Hyun-Sook Pai

Abstract read
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In one paragraph

Article in Plant molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Young JeonDepartment of Systems Biology, Yonsei University, Seoul, 03722, South Korea.
Hee-Kyung AhnDepartment of Systems Biology, Yonsei University, Seoul, 03722, South Korea.
Yong Won KangR&D Center, Morechem Co., Ltd., Yongin, Gyeonggi-do, 16954, South Korea.
Hyun-Sook PaiDepartment of Systems Biology, Yonsei University, Seoul, 03722, South Korea. hspai@yonsei.ac.kr.ORCID http://orcid.org/0000-0003-1345-5840
Yonsei University · KR

Funding

Basic Science Research Program (NRF) 2016-11-1224Cooperative Research Program for Agriculture Science & Technology Development (Plant Molecular Breeding Center) PJ01114701Cooperative Research Program for Agriculture Science & Technology Development (Systems & Synthetic Agrobiotech Center) PJ01118901
6 · The paper itself

Abstract

key messagePlant RbgA GTPase is targeted to chloroplasts and co-fractionated with chloroplast ribosomes, and plays a role in chloroplast rRNA processing and/or ribosome biogenesis. Ribosome Biogenesis GTPase A (RbgA) homologs are evolutionarily conserved GTPases that are widely distributed in both prokaryotes and eukaryotes. In this study, we investigated functions of chloroplast-targeted RbgA. Nicotiana benthamiana RbgA (NbRbgA) and Arabidopsis thaliana RbgA (AtRbgA) contained a conserved GTP-binding domain and a plant-specific C-terminal domain. NbRbgA and AtRbgA were mainly localized in chloroplasts, and possessed GTPase activity. Since Arabidopsis rbgA null mutants exhibited an embryonic lethal phenotype, virus-induced gene silencing (VIGS) of NbRbgA was performed in N. benthamiana. NbRbgA VIGS resulted in a leaf-yellowing phenotype caused by disrupted chloroplast development. NbRbgA was mainly co-fractionated with 50S/70S ribosomes and interacted with the chloroplast ribosomal proteins cpRPL6 and cpRPL35. NbRbgA deficiency lowered the levels of mature 23S and 16S rRNAs in chloroplasts and caused processing defects. Sucrose density gradient sedimentation revealed that NbRbgA-deficient chloroplasts contained reduced levels of mature 23S and 16S rRNAs and diverse plastid-encoded mRNAs in the polysomal fractions, suggesting decreased protein translation activity in the chloroplasts. Interestingly, NbRbgA protein was highly unstable under high light stress, suggesting its possible involvement in the control of chloroplast ribosome biogenesis under environmental stresses. Collectively, these results suggest a role for RbgA GTPase in chloroplast rRNA processing/ribosome biogenesis, affecting chloroplast protein translation in higher plants.

Indexed as

ArabidopsisArabidopsis ProteinsChloroplast ProteinsChloroplastsGene SilencingGTP PhosphohydrolasesNicotianaOrganelle BiogenesisPlant LeavesPolyribosomesProtein TransportRibosomal ProteinsRibosomesRNA, MessengerRNA, RibosomalArabidopsis ProteinsChloroplast ProteinsGTP PhosphohydrolasesRibosomal ProteinsRNA, MessengerRNA, RibosomalChloroplast abnormalityNicotiana benthamianaRibosomal RNA processingRibosome associationVirus-induced gene silencing

Identifiers

PMID29038916
OpenAlexW2765482290

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.