Evidence map›Paper›PMID 29038434›Full record

ArticleNature communications2017

Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility.

Hazel Bull, M Cristina Casao, Monika Zwirek, Andrew J Flavell, William T B Thomas, Wenbin Guo, Runxuan Zhang, Paulo Rapazote-Flores, Stylianos Kyriakidis, Joanne Russell and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
19.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Identification and map-based cloning of long glume mutant geneMolecular breeding : new strategies in plant improvement · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. Characterization of a barley (Frontiers in plant science · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The barley mutant multiflorus2.b reveals quantitative genetic variation for new spikelet architecture.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  19. The barleyFrontiers in genetics · 2022
    Article
  20. Analyses ofPlants (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Hazel BullJames Hutton Limited, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
M Cristina CasaoCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Monika ZwirekCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Andrew J FlavellDivision of Plant Sciences, School of Life Sciences, The University of Dundee at The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
William T B ThomasCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Wenbin GuoDivision of Plant Sciences, School of Life Sciences, The University of Dundee at The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Runxuan ZhangInformation and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Paulo Rapazote-FloresInformation and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Stylianos KyriakidisDivision of Plant Sciences, School of Life Sciences, The University of Dundee at The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Joanne RussellCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Arnis DrukaCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland.
Sarah M McKimDivision of Plant Sciences, School of Life Sciences, The University of Dundee at The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland. s.mckim@dundee.ac.uk.
Robbie WaughCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland. robbie.waugh@hutton.ac.uk.ORCID http://orcid.org/0000-0003-1045-3065
James Hutton Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The barley inflorescence (spike) comprises a multi-noded central stalk (rachis) with tri-partite clusters of uni-floretted spikelets attached alternately along its length. Relative fertility of lateral spikelets within each cluster leads to spikes with two or six rows of grain, or an intermediate morphology. Understanding the mechanisms controlling this key developmental step could provide novel solutions to enhanced grain yield. Classical genetic studies identified five major SIX-ROWED SPIKE (VRS) genes, with four now known to encode transcription factors. Here we identify and characterise the remaining major VRS gene, VRS3, as encoding a putative Jumonji C-type H3K9me2/me3 demethylase, a regulator of chromatin state. Exploring the expression network modulated by VRS3 reveals specific interactions, both with other VRS genes and genes involved in stress, hormone and sugar metabolism. We show that combining a vrs3 mutant allele with natural six-rowed alleles of VRS1 and VRS5 leads to increased lateral grain size and greater grain uniformity.The VRS genes of barley control the fertility of the lateral spikelets on the barley inflorescence. Here, Bull et al. show that VRS3 encodes a putative Jumonji C-type histone demethylase that regulates expression of other VRS genes, and genes involved in stress, hormone and sugar metabolism.

Indexed as

Gene Expression Regulation, PlantCarbohydrate MetabolismFertilityFlowering TopsHaplotypesHordeumJumonji Domain-Containing Histone DemethylasesMutationPlant Growth RegulatorsPlant ProteinsSeedsSelection, GeneticStress, PhysiologicalJumonji Domain-Containing Histone DemethylasesPlant Growth RegulatorsPlant Proteins

Identifiers

PMID29038434
PMCPMC5643332
OpenAlexW2762014633

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.