Evidence map›Paper›PMID 29038170›Full record

ArticleG3 (Bethesda, Md.)2017

Dissecting Nucleosome Function with a Comprehensive Histone H2A and H2B Mutant Library.

Shuangying Jiang, Yan Liu, Caiyue Xu, Yun Wang, Jianhui Gong, Yue Shen, Qingyu Wu, Jef D Boeke, Junbiao Dai

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Control of Gene Expression via the Yeast CWI Pathway.International journal of molecular sciences · 2022
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Shuangying JiangMinistry of Education Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, PR China.ORCID 0000-0002-6786-6533
Yan LiuMinistry of Education Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, PR China.
Caiyue XuMinistry of Education Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, PR China.
Yun WangChina National GeneBank, Beijing Genomics Institute-Shenzhen, Shenzhen 518120, China.
Jianhui GongChina National GeneBank, Beijing Genomics Institute-Shenzhen, Shenzhen 518120, China.
Yue ShenChina National GeneBank, Beijing Genomics Institute-Shenzhen, Shenzhen 518120, China.
Qingyu WuMinistry of Education Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, PR China.
Jef D BoekeInstitute for Systems Genetics, New York University Langone Medical Center, New York 10011.
Junbiao DaiMinistry of Education Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, PR China junbiao.dai@siat.ac.cn.
Tsinghua University · CNBGI Group (China) · CNChina National GeneBank · CNNYU Langone Health · USShenzhen Institutes of Advanced Technology · CN

Funding

Networks, Pathways and Dynamics of Lysine ModificationU54GM103520 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BADER, JOEL S. · 2012 to 2013
$7.0M
NIGMS NIH HHS U54 GM103520
6 · The paper itself

Abstract

Using a comprehensive library of histone H2A and H2B mutants, we assessed the biological function of each amino acid residue involved in various stress conditions including exposure to different DNA damage-inducing reagents, different growth temperatures, and other chemicals. H2B N- and H2A C-termini were critical for maintaining nucleosome function and mutations in these regions led to pleiotropic phenotypes. Additionally, two screens were performed using this library, monitoring heterochromatin gene silencing and genome stability, to identify residues that could compromise normal function when mutated. Many distinctive regions within the nucleosome were revealed. Furthermore, we used the barcode sequencing (bar-seq) method to profile the mutant composition of many libraries in one high-throughput sequencing experiment, greatly reducing the labor and increasing the capacity. This study not only demonstrates the applications of the versatile histone library, but also reveals many previously unknown functions of histone H2A and H2B.

Indexed as

Amino AcidsDNA DamageGene LibraryGene SilencingGenomic InstabilityHigh-Throughput Nucleotide SequencingHistonesMutant ProteinsNucleosomesProtein BindingSaccharomyces cerevisiaeAmino AcidsHistonesMutant ProteinsNucleosomesDNA damageheterochromatin gene silencinghistonepost-translational modification

Identifiers

PMID29038170
PMCPMC5714483
OpenAlexW2765861384

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.