Evidence map›Paper›PMID 29038128›Full record

ArticleInfection and immunity2018

Microbial Composition Predicts Genital Tract Inflammation and Persistent Bacterial Vaginosis in South African Adolescent Females.

Katie Lennard, Smritee Dabee, Shaun L Barnabas, Enock Havyarimana, Anna Blakney, Shameem Z Jaumdally, Gerrit Botha, Nonhlanhla N Mkhize, Linda-Gail Bekker, David A Lewis and 4 more

Abstract read
In one paragraph

Article in Infection and immunity, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed, 1 pooled it
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 1 synthesis or guideline pooled it, 176 citations in OpenAlex.

  1. The Effect of Exogenous Sex Steroids on the Vaginal Microbiota: A Systematic Review.Frontiers in cellular and infection microbiology · 2021
    Pooled it
  2. Trial
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  6. Genital inflammatory status and the innate immune response to contraceptive initiation.American journal of reproductive immunology (New York, N.Y. : 1989) · 2022
    Trial
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  13. Relationship between vitamin D status and the vaginal microbiome during pregnancy.Journal of perinatology : official journal of the California Perinatal Association · 2019
    Trial
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  16. Article
  17. Review
  18. HIV Transmission and Immunology of the Male Reproductive Tract.American journal of reproductive immunology (New York, N.Y. : 1989) · 2026
    Review
  19. Article
  20. Review

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Katie LennardInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Smritee DabeeInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Shaun L BarnabasInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Enock HavyarimanaInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Anna BlakneyDepartment of Bioengineering, University of Washington, Seattle, Washington, USA.
Shameem Z JaumdallyInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Gerrit BothaInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Nonhlanhla N MkhizeNational Institute for Communicable Diseases, Sandringham, Johannesburg, South Africa.
Linda-Gail BekkerInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
David A LewisWestern Sydney Sexual Health Centre, Parramatta, Australia.
Glenda GrayPerinatal HIV Research Unit, University of the Witwatersrand, Johannesburg, South Africa.
Nicola MulderInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Jo-Ann S PassmoreInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Heather B JaspanInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa hbjaspan@gmail.com.
University of Cape Town · ZAUniversity of Washington · USNational Institute for Communicable DiseasesSouth African Medical Research Council · ZATaronga Conservation Society Australia · AU

Funding

LOC: HIV Vaccine Trials NetworkUM1AI068614 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Dan H. Barouch, Lawrence Corey · 2011 to 2026
$1175.6M
Assessing feeding practices, immune activation, and HIV risk in African infantsK08HD069201 · NICHD · SEATTLE CHILDREN'S HOSPITAL · PI JASPAN, HEATHER BERYL · 2011 to 2015
$644k
NIAID NIH HHS UM1 AI068614NICHD NIH HHS K08 HD069201
6 · The paper itself

Abstract

Young African females are at an increased risk of HIV acquisition, and genital inflammation or the vaginal microbiome may contribute to this risk. We studied these factors in 168 HIV-negative South African adolescent females aged 16 to 22 years. Unsupervised clustering of 16S rRNA gene sequences revealed three clusters (subtypes), one of which was strongly associated with genital inflammation. In a multivariate model, the microbiome compositional subtype and hormonal contraception were significantly associated with genital inflammation. We identified 40 taxa significantly associated with inflammation, including those reported previously (

Indexed as

AdolescentFemaleGenitaliaHIV InfectionsHumansInflammationMicrobiotaReproductive Tract InfectionsRNA, Ribosomal, 16SVaginosis, BacterialYoung AdultRNA, Ribosomal, 16S16S RNAfemale genital tract microbiomeHIV susceptibilityHIV target cellsinflammationvaginal microbiome

Identifiers

PMID29038128
PMCPMC5736802
OpenAlexW2766612280

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.