Evidence map›Paper›PMID 29038051›Full record

ArticleBiochimica et biophysica acta. Molecular basis of disease2018

Integrated approach reveals diet, APOE genotype and sex affect immune response in APP mice.

Kyong Nyon Nam, Cody M Wolfe, Nicholas F Fitz, Florent Letronne, Emilie L Castranio, Anais Mounier, Jonathan Schug, Iliya Lefterov, Radosveta Koldamova

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. Molecular basis of disease, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Review
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  7. Article
  8. Effects ofMetabolites · 2023
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  15. Mapping of Microglial Brain Region, Sex and Age Heterogeneity in Obesity.International journal of molecular sciences · 2021
    Review
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  18. APOE genotype affects metabolic and Alzheimer-related outcomes induced by Western diet in female EFAD mice.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Kyong Nyon NamDepartment of Environmental and Occupational Health, University of Pittsburgh, United States.
Cody M WolfeDepartment of Environmental and Occupational Health, University of Pittsburgh, United States.
Nicholas F FitzDepartment of Environmental and Occupational Health, University of Pittsburgh, United States.
Florent LetronneDepartment of Environmental and Occupational Health, University of Pittsburgh, United States.
Emilie L CastranioDepartment of Environmental and Occupational Health, University of Pittsburgh, United States.
Anais MounierDepartment of Environmental and Occupational Health, University of Pittsburgh, United States.
Jonathan SchugDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, United States.
Iliya LefterovDepartment of Environmental and Occupational Health, University of Pittsburgh, United States. Electronic address: iliyal@pitt.edu.
Radosveta KoldamovaDepartment of Environmental and Occupational Health, University of Pittsburgh, United States. Electronic address: radak@pitt.edu.
University of Pittsburgh · USUniversity of Pennsylvania · US

Funding

Epigenetic and phenotypic effects of arsenic: impacts on cognition and ADR01ES024233 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KOLDAMOVA, RADOSVETA, LEFTEROV, ILIYA · 2014 to 2018
$2.6M
Genome wide analysis of LXR binding - metabolic and epigenetic regulation in ADR01AG037919 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEFTEROV, ILIYA, SCHUG, JONATHAN · 2012 to 2016
$2.4M
Age dependent APOE isoform specific effect on immune receptor mediated phagocytosis in brainRF1AG056371 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KOLDAMOVA, RADOSVETA, LEFTEROV, ILIYA · 2017 to 2018
$2.3M
Peripheral & Brain Cholesterol Metabolism in Neurodegenerative Mouse ModelsK01AG044490 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FITZ, NICHOLAS FRANCIS · 2014 to 2018
$463k
Request for a Nikon A1 confocal microscopeS10OD019973 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WATKINS, SIMON C · 2015 to 2015
$358k
NIA NIH HHS K01 AG044490NIA NIH HHS R01 AG037919NIA NIH HHS RF1 AG056371NIEHS NIH HHS R01 ES024233NIH HHS S10 OD019973
6 · The paper itself

Abstract

Alzheimer's disease (AD) is a multifactorial neurodegenerative disorder that is influenced by genetic and environmental risk factors, such as inheritance of ε4 allele of APOE (APOE4), sex and diet. Here, we examined the effect of high fat diet (HFD) on amyloid pathology and expression profile in brains of AD model mice expressing human APOE isoforms (APP/E3 and APP/E4 mice). APP/E3 and APP/E4 mice were fed HFD or Normal diet for 3months. We found that HFD significantly increased amyloid plaques in male and female APP/E4, but not in APP/E3 mice. To identify differentially expressed genes and gene-networks correlated to diet, APOE isoform and sex, we performed RNA sequencing and applied Weighted Gene Co-expression Network Analysis. We determined that the immune response network with major hubs Tyrobp/DAP12, Csf1r, Tlr2, C1qc and Laptm5 correlated significantly and positively to the phenotype of female APP/E4-HFD mice. Correspondingly, we found that in female APP/E4-HFD mice, microglia coverage around plaques, particularly of larger size, was significantly reduced. This suggests altered containment of the plaque growth and sex-dependent vulnerability in response to diet. The results of our study show concurrent impact of diet, APOE isoform and sex on the brain transcriptome and AD-like phenotype.

Indexed as

DietAmyloid beta-PeptidesAnimalsApolipoproteins EDisease Models, AnimalFemaleGene-Environment InteractionGene Regulatory NetworksGenotypeImmunity, InnateMaleMiceMice, TransgenicPlaque, AmyloidSex FactorsSystems BiologyAmyloid beta-PeptidesApolipoproteins EAlzheimer's diseaseAPOE genotypeAPP miceDietMicrogliaTyrobp/DAP12

Identifiers

PMID29038051
PMCPMC5714325
OpenAlexW2763508344

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.