Evidence map›Paper›PMID 29037759›Full record

ArticleJournal of molecular biology2017

A New Yeast Peroxin, Pex36, a Functional Homolog of Mammalian PEX16, Functions in the ER-to-Peroxisome Traffic of Peroxisomal Membrane Proteins.

Jean-Claude Farré, Krypton Carolino, Oleh V Stasyk, Olena G Stasyk, Zlatan Hodzic, Gaurav Agrawal, Andreas Till, Marco Proietto, James Cregg, Andriy A Sibirny and 1 more

Abstract readComparative Study
In one paragraph

Article in Journal of molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Synthetic and systems biotechnology · 2025
    Article
  2. The peroxisome: an update on mysteries 3.0.Histochemistry and cell biology · 2024
    Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Peroxisome: Metabolic Functions and Biogenesis.Advances in experimental medicine and biology · 2020
    Review
  10. Article
  11. Review
  12. The peroxisome: an update on mysteries 2.0.Histochemistry and cell biology · 2018
    Review
  13. Article
  14. Unloosing the Gordian knot of peroxisome formation.Current opinion in cell biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jean-Claude FarréSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA.
Krypton CarolinoSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA.
Oleh V StasykInstitute of Cell Biology, National Academy of Sciences of Ukraine, Drahomanov Street 14/16, Lviv 79005, Ukraine.
Olena G StasykInstitute of Cell Biology, National Academy of Sciences of Ukraine, Drahomanov Street 14/16, Lviv 79005, Ukraine; Department of Biochemistry, Biological Faculty, Ivan Franko National University of Lviv, Hrushevsky Street 4, Lviv 79005, Ukraine.
Zlatan HodzicSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA.
Gaurav AgrawalSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA.
Andreas TillInstitute of Reconstructive Neurobiology, University of Bonn Medical Faculty, Sigmund-Freud-Strasse 25, 53105 Bonn, Germany.
Marco ProiettoSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA.
James CreggKeck Graduate Institute of Applied Life Science, 535 Watson Drive, Claremont, CA 91711, USA.
Andriy A SibirnyInstitute of Cell Biology, National Academy of Sciences of Ukraine, Drahomanov Street 14/16, Lviv 79005, Ukraine; University of Rzeszow, Zelwerowicza 4, Rzeszow 35-601, Poland.
Suresh SubramaniSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address: ssubramani@ucsd.edu.

Funding

TARGETING OF PROTEINS INTO PEROXISOMESR01DK041737 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AITCHISON, JOHN D., SUBRAMANI, SURESH · 1990 to 2025
$8.4M
ALCOHOL EFFECTS ON SUBCELLULAR ORGANELLES OF THE LIVERR37AA010968 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI RUBIN, EMANUEL · 1998 to 2005
$3.3M
Changes in monocyte small noncoding RNAs as a predictor of cognitive decline in mild cognitive impairment and Alzheimer's diseaseR21AG081480 · NIA · STATE UNIVERSITY NEW YORK STONY BROOK · PI KUAN, PEI-FEN · 2023 to 2024
$439k
Multispectral Imaging of Neurons and Astrocytes: Revealing Spatiotemporal Organelle Phenotypes in Health and NeurodegenerationF31AG079622 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RHOADS, SHANNON · 2023 to 2024
$80k
NIAAA NIH HHS R37 AA010968NIA NIH HHS F31 AG079622NIA NIH HHS R21 AG081480NIDDK NIH HHS R01 DK041737
6 · The paper itself

Abstract

Peroxisomal membrane proteins (PMPs) traffic to peroxisomes by two mechanisms: direct insertion from the cytosol into the peroxisomal membrane and indirect trafficking to peroxisomes via the endoplasmic reticulum (ER). In mammals and yeast, several PMPs traffic via the ER in a Pex3- and Pex19-dependent manner. In Komagataella phaffii (formerly called Pichia pastoris) specifically, the indirect traffic of Pex2, but not of Pex11 or Pex17, depends on Pex3, but all PMPs tested for indirect trafficking require Pex19. In mammals, the indirect traffic of PMPs also requires PEX16, a protein that is absent in most yeast species. In this study, we isolated PEX36, a new gene in K. phaffii, which encodes a PMP. Pex36 is required for cell growth in conditions that require peroxisomes for the metabolism of certain carbon sources. This growth defect in cells lacking Pex36 can be rescued by the expression of human PEX16, Saccharomyces cerevisiae Pex34, or by overexpression of the endogenous K. phaffii Pex25. Pex36 is not an essential protein for peroxisome proliferation, but in the absence of the functionally redundant protein, Pex25, it becomes essential and less than 20% of these cells show import-incompetent, peroxisome-like structures (peroxisome remnants). In the absence of both proteins, peroxisome biogenesis and the intra-ER sorting of Pex2 and Pex11C are seriously impaired, likely by affecting Pex3 and Pex19 function.

Indexed as

Endoplasmic ReticulumFungal ProteinsHumansMembrane ProteinsPeroxinsPeroxisomesPichiaProtein TransportFungal ProteinsMembrane ProteinsPeroxinsPEX16 protein, humanERperoxinperoxisome biogenesisPMP traffickingpre-peroxisomal vesicle formation

Identifiers

PMID29037759
PMCPMC5693695

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.