Evidence map›Paper›PMID 29036710›Full record

ArticleJournal of experimental botany2017

A disulfide bond A-like oxidoreductase is a strong candidate gene for self-incompatibility in apricot (Prunus armeniaca) pollen.

Juan Vicente Muñoz-Sanz, Elena Zuriaga, María L Badenes, Carlos Romero

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

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  12. Review
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  14. Horticulture research · 2019
    Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Juan Vicente Muñoz-SanzFruit Tree Breeding Department. Instituto Valenciano de Investigaciones Agrarias (IVIA). CV-315, Km. 10,7. 46113 Moncada (Valencia), Spain.
Elena ZuriagaFruit Tree Breeding Department. Instituto Valenciano de Investigaciones Agrarias (IVIA). CV-315, Km. 10,7. 46113 Moncada (Valencia), Spain.
María L BadenesFruit Tree Breeding Department. Instituto Valenciano de Investigaciones Agrarias (IVIA). CV-315, Km. 10,7. 46113 Moncada (Valencia), Spain.
Carlos RomeroInstituto de Biología Molecular y Celular de Plantas (IBMCP), Universidad Politécnica de Valencia-Consejo Superior de Investigaciones Científicas. C/Ingeniero Fausto Elio s/n, 46022 Valencia, Spain.
Instituto Valenciano de Investigaciones Agrarias · ESConsejo Superior de Investigaciones Científicas · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

S-RNase based gametophytic self-incompatibility (SI) is a widespread prezygotic reproductive barrier in flowering plants. In the Solanaceae, Plantaginaceae and Rosaceae gametophytic SI is controlled by the pistil-specific S-RNases and the pollen S-locus F-box proteins but non-S-specific factors, namely modifiers, are also required. In apricot, Prunus armeniaca (Rosaceae), we previously mapped two pollen-part mutations that confer self-compatibility in cultivars Canino and Katy at the distal end of chromosome 3 (M-locus) unlinked to the S-locus. Here, we used high-resolution mapping to identify the M-locus with an ~134 kb segment containing ParM-1-16 genes. Gene expression analysis identified four genes preferentially expressed in anthers as modifier gene candidates, ParM-6, -7, -9 and -14. Variant calling of WGS Illumina data from Canino, Katy, and 10 self-incompatible cultivars detected a 358 bp miniature inverted-repeat transposable element (MITE) insertion in ParM-7 shared only by self-compatible apricots, supporting ParM-7 as strong candidate gene required for SI. ParM-7 encodes a disulfide bond A-like oxidoreductase protein, which we named ParMDO. The MITE insertion truncates the ParMDO ORF and produces a loss of SI function, suggesting that pollen rejection in Prunus is dependent on redox regulation. Based on phylogentic analyses we also suggest that ParMDO may have originated from a tandem duplication followed by subfunctionalization and pollen-specific expression.

Indexed as

DisulfidesGenetic LociGenotypeHigh-Throughput Nucleotide SequencingLoss of Function MutationOxidoreductasesPlant ProteinsPollenPrunus armeniacaSelf-Incompatibility in Flowering PlantsSequence Analysis, DNADisulfidesOxidoreductasesPlant ProteinsDsbA oxidoreductasegametophytic self-incompatibilityM-locusmodifierpollen-part mutationPrunus

Identifiers

PMID29036710
PMCPMC5853662
OpenAlexW2757499176

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.