Evidence map›Paper›PMID 29036638›Full record

ArticleNucleic acids research2017

The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module.

David Dilworth, Santosh K Upadhyay, Pierre Bonnafous, Amiirah Bibi Edoo, Sarah Bourbigot, Francy Pesek-Jardim, Geoff Gudavicius, Jason J Serpa, Evgeniy V Petrotchenko, Christoph H Borchers and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  5. Article
  6. Esterase D stabilizes FKBP25 to suppress mTORC1.Cellular & molecular biology letters · 2021
    Article
  7. FKBP25 Regulates Meiotic Apparatus During Mouse Oocyte Maturation.Frontiers in cell and developmental biology · 2021
    Article
  8. FKBP25 participates in DNA double-strand break repair.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2020
    Article
  9. Article
  10. Article
  11. FKBP Ligands-Where We Are and Where to Go?Frontiers in pharmacology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 3 countries.

David DilworthDept. of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Santosh K UpadhyayUniv. Bordeaux, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, F-33607 Pessac, France.
Pierre BonnafousUniv. Bordeaux, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, F-33607 Pessac, France.
Amiirah Bibi EdooUniv. Bordeaux, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, F-33607 Pessac, France.
Sarah BourbigotUniv. Bordeaux, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, F-33607 Pessac, France.
Francy Pesek-JardimDept. of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Geoff GudaviciusDept. of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Jason J SerpaDept. of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Evgeniy V PetrotchenkoDept. of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Christoph H BorchersDept. of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Christopher J NelsonDept. of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Cameron D MackerethUniv. Bordeaux, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, F-33607 Pessac, France.
University of Victoria · CACentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prolyl isomerases are defined by a catalytic domain that facilitates the cis-trans interconversion of proline residues. In most cases, additional domains in these enzymes add important biological function, including recruitment to a set of protein substrates. Here, we report that the N-terminal basic tilted helix bundle (BTHB) domain of the human prolyl isomerase FKBP25 confers specific binding to double-stranded RNA (dsRNA). This binding is selective over DNA as well as single-stranded oligonucleotides. We find that FKBP25 RNA-association is required for its nucleolar localization and for the vast majority of its protein interactions, including those with 60S pre-ribosome and early ribosome biogenesis factors. An independent mobility of the BTHB and FKBP catalytic domains supports a model by which the N-terminus of FKBP25 is anchored to regions of dsRNA, whereas the FKBP domain is free to interact with neighboring proteins. Apart from the identification of the BTHB as a new dsRNA-binding module, this domain adds to the growing list of auxiliary functions used by prolyl isomerases to define their primary cellular targets.

Indexed as

Nucleic Acid ConformationProtein DomainsProtein Structure, SecondaryBase SequenceBlotting, WesternCatalytic DomainCell Line, TumorHEK293 CellsHumansMicroscopy, ConfocalModels, MolecularProtein BindingRibosomesRNA, Double-StrandedTacrolimus Binding ProteinsFKBP3 protein, humanRNA, Double-StrandedTacrolimus Binding Proteins

Identifiers

PMID29036638
PMCPMC5714180
OpenAlexW2758671498

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.