Evidence map›Paper›PMID 29036220›Full record

ArticlePLoS genetics2017

Defective replication initiation results in locus specific chromosome breakage and a ribosomal RNA deficiency in yeast.

Joseph C Sanchez, Elizabeth X Kwan, Thomas J Pohl, Haley M Amemiya, M K Raghuraman, Bonita J Brewer

Abstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Two differentially stable rDNA loci coexist on the same chromosome and form a single nucleolus.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Global genomic instability caused by reduced expression of DNA polymerase ε in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Article
  9. Identification andmicroPublication biology · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. The peculiar genetics of the ribosomal DNA blurs the boundaries of transgenerational epigenetic inheritance.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2019
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joseph C SanchezMolecular and Cellular Biology Program, University of Washington, Seattle, WA, United States of America.
Elizabeth X KwanDepartment of Genome Sciences, University of Washington, Seattle, WA, United States of America.
Thomas J PohlMolecular and Cellular Biology Program, University of Washington, Seattle, WA, United States of America.ORCID http://orcid.org/0000-0002-8182-3249
Haley M AmemiyaDepartment of Genome Sciences, University of Washington, Seattle, WA, United States of America.ORCID http://orcid.org/0000-0002-2610-4436
M K RaghuramanDepartment of Genome Sciences, University of Washington, Seattle, WA, United States of America.
Bonita J BrewerMolecular and Cellular Biology Program, University of Washington, Seattle, WA, United States of America.

Funding

INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
EUKARYOTIC CHROMOSOME STRUCTURE AND REPLICATIONR01GM018926 · NIGMS · UNIVERSITY OF WASHINGTON · PI BREWER, BONITA J · 1985 to 2016
$6.8M
Choreography of Eukaryotic DNA ReplicationR35GM122497 · NIGMS · UNIVERSITY OF WASHINGTON · PI BONITA J BREWER · 2017 to 2026
$5.7M
EUKARYOTIC CHROMOSOME REPLICATIONR37GM018926 · NIGMS · UNIVERSITY OF WASHINGTON · PI FANGMAN, WALTON L · 1995 to 2004
$2.6M
RESEARCH TRAINING IN BIOMEDICAL SCIENCESF31GM018926 · NIGMS · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI RODRIGUES, PAULA D · 1997 to 2001
$46k
NHGRI NIH HHS T32 HG000035NIGMS NIH HHS F31 GM018926NIGMS NIH HHS R01 GM018926NIGMS NIH HHS R35 GM122497NIGMS NIH HHS R37 GM018926
6 · The paper itself

Abstract

A form of dwarfism known as Meier-Gorlin syndrome (MGS) is caused by recessive mutations in one of six different genes (ORC1, ORC4, ORC6, CDC6, CDT1, and MCM5). These genes encode components of the pre-replication complex, which assembles at origins of replication prior to S phase. Also, variants in two additional replication initiation genes have joined the list of causative mutations for MGS (Geminin and CDC45). The identity of the causative MGS genetic variants strongly suggests that some aspect of replication is amiss in MGS patients; however, little evidence has been obtained regarding what aspect of chromosome replication is faulty. Since the site of one of the missense mutations in the human ORC4 alleles is conserved between humans and yeast, we sought to determine in what way this single amino acid change affects the process of chromosome replication, by introducing the comparable mutation into yeast (orc4Y232C). We find that yeast cells with the orc4Y232C allele have a prolonged S-phase, due to compromised replication initiation at the ribosomal DNA (rDNA) locus located on chromosome XII. The inability to initiate replication at the rDNA locus results in chromosome breakage and a severely reduced rDNA copy number in the survivors, presumably helping to ensure complete replication of chromosome XII. Although reducing rDNA copy number may help ensure complete chromosome replication, orc4Y232C cells struggle to meet the high demand for ribosomal RNA synthesis. This finding provides additional evidence linking two essential cellular pathways-DNA replication and ribosome biogenesis.

Indexed as

Amino Acid SequenceCell Cycle ProteinsChromosome BreakageCongenital MicrotiaDNA ReplicationDNA, RibosomalGrowth DisordersHumansMicrognathismMutation, MissenseOrigin Recognition ComplexPatellaRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCell Cycle ProteinsDNA, RibosomalORC4 protein, humanORC4 protein, S cerevisiaeOrigin Recognition ComplexRNA, RibosomalSaccharomyces cerevisiae Proteins

Identifiers

PMID29036220
PMCPMC5658192

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.