Evidence map›Paper›PMID 29034954›Full record

ArticleThe New phytologist2018

Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion.

Koen J F Verhoeven, Eline H Verbon, Thomas P van Gurp, Carla Oplaat, Julie Ferreira de Carvalho, Alison M Morse, Mark Stahl, Mirka Macel, Lauren M McIntyre

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
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  5. Genomic and Epigenomic Changes in the Progeny of Cold-StressedInternational journal of molecular sciences · 2024
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  7. Phylogenomic analysis provides insights intoFrontiers in plant science · 2023
    Article
  8. Heritable responses to stress in plants.Quantitative plant biology · 2023
    Review
  9. Article
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  11. Review
  12. Article
  13. Article
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  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Koen J F VerhoevenTerrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, Wageningen, the Netherlands.
Eline H VerbonPlant-Microbe Interactions, Utrecht University, Padualaan 6, Utrecht, the Netherlands.
Thomas P van GurpTerrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, Wageningen, the Netherlands.
Carla OplaatTerrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, Wageningen, the Netherlands.
Julie Ferreira de CarvalhoTerrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, Wageningen, the Netherlands.
Alison M MorseMolecular Genetics and Microbiology, and the Genetics Institute, University of Florida, 2033 Mowry Road, Gainesville, FL, 32610, USA.
Mark StahlCenter for Plant Molecular Biology, Tübingen University, Auf der Morgenstelle 32, Tübingen, D-72076, Germany.
Mirka MacelMolecular Interaction Ecology, Department of Plant Science, Radboud University Nijmegen, PO Box 9010, Nijmegen, 6500 NL, the Netherlands.
Lauren M McIntyreMolecular Genetics and Microbiology, and the Genetics Institute, University of Florida, 2033 Mowry Road, Gainesville, FL, 32610, USA.
Netherlands Institute of Ecology · NLUniversity of Florida · USRadboud University Nijmegen · NLUniversity of Tübingen · DEUtrecht University · NL

Funding

Southeast Resource Center for Integrated Metabolomics (SECIM)U24DK097209 · NIDDK · UNIVERSITY OF FLORIDA · PI EDISON, ARTHUR S, YOST, RICHARD A. · 2013 to 2017
$9.2M
NIDDK NIH HHS U24 DK097209
6 · The paper itself

Abstract

Parental environments can influence offspring traits. However, the magnitude of the impact of parental environments on offspring molecular phenotypes is poorly understood. Here, we test the direct effects and intergenerational effects of jasmonic acid (JA) treatment, which is involved in herbivory-induced defense signaling, on transcriptomes and metabolomes in apomictic common dandelion (Taraxacum officinale). In a full factorial crossed design with parental and offspring JA and control treatments, we performed leaf RNA-seq gene expression analysis, LC-MS metabolomics and total phenolics assays in offspring plants. Expression analysis, leveraged by a de novo assembled transcriptome, revealed an induced response to JA exposure that is consistent with known JA effects. The intergenerational effect of treatment was considerable: 307 of 858 detected JA-responsive transcripts were affected by parental JA treatment. In terms of the numbers of metabolites affected, the magnitude of the chemical response to parental JA exposure was c. 10% of the direct JA treatment response. Transcriptome and metabolome analyses both identified the phosphatidylinositol signaling pathway as a target of intergenerational JA effects. Our results highlight that parental environments can have substantial effects in offspring generations. Transcriptome and metabolome assays provide a basis for zooming in on the potential mechanisms of inherited JA effects.

Indexed as

EnvironmentApomixisCluster AnalysisCyclopentanesGene Expression Regulation, PlantGene OntologyMetabolomeMetabolomicsOxylipinsPhenolsPlant LeavesTaraxacumTranscriptomeCyclopentanesjasmonic acidOxylipinsPhenolsinduced defensesjasmonic acid (JA)LC-MSmetabolomicsRNA-seqTaraxacum officinale (common dandelion)transcriptomicstransgenerational effects

Identifiers

PMID29034954
PMCPMC5741498
OpenAlexW2760195776

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.