Evidence map›Paper›PMID 29029622›Full record

ArticleBMC systems biology2017

Paracrine and autocrine regulation of gene expression by Wnt-inhibitor Dickkopf in wild-type and mutant hepatocytes.

Niklas Hartung, Uwe Benary, Jana Wolf, Bente Kofahl

Open access · diamondAbstract read
In one paragraph

Article in BMC systems biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Niklas HartungUniversity of Potsdam, Institute of Mathematics, Karl-Liebknecht-Str. 24, Potsdam, 14476, Germany.
Uwe BenaryMathematical Modelling of Cellular Processes, Max Delbrueck Center for Molecular Medicine, Robert-Roessle-Str. 10, Berlin, 13125, Germany.
Jana WolfMathematical Modelling of Cellular Processes, Max Delbrueck Center for Molecular Medicine, Robert-Roessle-Str. 10, Berlin, 13125, Germany.
Bente KofahlMathematical Modelling of Cellular Processes, Max Delbrueck Center for Molecular Medicine, Robert-Roessle-Str. 10, Berlin, 13125, Germany. bente.kofahl@mdc-berlin.de.
Max Delbrück Center · DEUniversity of Freiburg · DEUniversity of Potsdam · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCells are able to communicate and coordinate their function within tissues via secreted factors. Aberrant secretion by cancer cells can modulate this intercellular communication, in particular in highly organised tissues such as the liver. Hepatocytes, the major cell type of the liver, secrete Dickkopf (Dkk), which inhibits Wnt/ β-catenin signalling in an autocrine and paracrine manner. Consequently, Dkk modulates the expression of Wnt/ β-catenin target genes. We present a mathematical model that describes the autocrine and paracrine regulation of hepatic gene expression by Dkk under wild-type conditions as well as in the presence of mutant cells.

resultsOur spatial model describes the competition of Dkk and Wnt at receptor level, intra-cellular Wnt/ β-catenin signalling, and the regulation of target gene expression for 21 individual hepatocytes. Autocrine and paracrine regulation is mediated through a feedback mechanism via Dkk and Dkk diffusion along the porto-central axis. Along this axis an APC concentration gradient is modelled as experimentally detected in liver. Simulations of mutant cells demonstrate that already a single mutant cell increases overall Dkk concentration. The influence of the mutant cell on gene expression of surrounding wild-type hepatocytes is limited in magnitude and restricted to hepatocytes in close proximity. To explore the underlying molecular mechanisms, we perform a comprehensive analysis of the model parameters such as diffusion coefficient, mutation strength and feedback strength.

conclusionsOur simulations show that Dkk concentration is elevated in the presence of a mutant cell. However, the impact of these elevated Dkk levels on wild-type hepatocytes is confined in space and magnitude. The combination of inter- and intracellular processes, such as Dkk feedback, diffusion and Wnt/ β-catenin signal transduction, allow wild-type hepatocytes to largely maintain their gene expression.

Indexed as

Gene Expression RegulationMutationAutocrine CommunicationHepatocytesHumansIntercellular Signaling Peptides and ProteinsModels, BiologicalParacrine CommunicationRNA, MessengerWnt ProteinsWnt Signaling PathwayIntercellular Signaling Peptides and ProteinsRNA, MessengerWnt ProteinsAPC concentration gradientDickkopf diffusion and feedback regulationMathematical modelParacrine and autocrine regulationReaction-diffusion systemWnt/ β-catenin signalling pathway

Identifiers

PMID29029622
PMCPMC5640931
OpenAlexW2761748232

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.