Evidence map›Paper›PMID 29029259›Full record

ArticleMolecular biology and evolution2018

First Experimental Assessment of Protein Intrinsic Disorder Involvement in an RNA Virus Natural Adaptive Process.

Justine Charon, Amandine Barra, Jocelyne Walter, Pauline Millot, Eugénie Hébrard, Benoît Moury, Thierry Michon

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
8.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 48 citations in OpenAlex.

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  10. The RyThe New phytologist · 2022
    Article
  11. Review
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  13. Polerovirus genomic variation.Virus evolution · 2021
    Article
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  19. Presence and structure-activity relationship of intrinsically disordered regions across mucins.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Justine CharonUMR Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, Villenave d'Ornon, France.
Amandine BarraUMR Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, Villenave d'Ornon, France.
Jocelyne WalterUMR Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, Villenave d'Ornon, France.
Pauline MillotUR Pathologie Végétale, INRA, Montfavet, France.
Eugénie HébrardUMR Interactions Plantes-Microorganismes-Environnement, IRD, CIRAD, Université de Montpellier, Montpellier, France.
Benoît MouryUR Pathologie Végétale, INRA, Montfavet, France.
Thierry MichonUMR Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, Villenave d'Ornon, France.
Université de Bordeaux · FRBiologie du Fruit et Pathologie · FRDiversité, génomes et interactions micro-organismes-insectes · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intrinsic disorder (ID) in proteins is defined as a lack of stable structure in physiological conditions. Intrinsically disordered regions (IDRs) are highly abundant in some RNA virus proteomes. Low topological constraints exerted on IDRs are expected to buffer the effect of numerous deleterious mutations and could be related to the remarkable adaptive potential of RNA viruses to overcome resistance of their host. To experimentally test this hypothesis in a natural pathosystem, a set of four variants of Potato virus Y (PVY; Potyvirus genus) containing various ID degrees in the Viral genome-linked (VPg) protein, a key determinant of potyvirus adaptation, was designed. To estimate the ID contribution to the VPg-based PVY adaptation, the adaptive ability of the four PVY variants was monitored in the pepper host (Capsicum annuum) carrying a recessive resistance gene. Intriguingly, the two mutants with the highest ID content displayed a significantly higher ability to restore infection in the resistant host, whereas the less intrinsically disordered mutant was unable to restore infection. The role of ID on virus adaptation may be due either to a larger exploration of evolutionary pathways or the minimization of fitness penalty caused by resistance-breaking mutations. This pioneering study strongly suggests the positive impact of ID in an RNA virus adaptive capacity.

Indexed as

AcclimatizationAdaptation, PhysiologicalBiological EvolutionCapsicumEvolution, MolecularGenome, ViralMutationPilot ProjectsPotyvirusProtein StabilityProteomeRibonucleoproteinsRNAViral Nonstructural Proteinsgenome-linked viral protein, potato virus YProteomeRibonucleoproteinsRNAViral Nonstructural Proteinseukaryotic translation initiation factor 4Epotyvirusprotein intrinsic disorderresistance breakdownRNA virus adaptationviral protein genome-linked

Identifiers

PMID29029259
PMCPMC5850501
OpenAlexW2755382675

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.