Evidence map›Paper›PMID 29029138›Full record

ArticleThe Journal of infectious diseases2017

The Female Genital Tract Microbiome Is Associated With Vaginal Antiretroviral Drug Concentrations in Human Immunodeficiency Virus-Infected Women on Antiretroviral Therapy.

Renee Donahue Carlson, Anandi N Sheth, Timothy D Read, Michael B Frisch, C Christina Mehta, Amy Martin, Richard E Haaland, Anar S Patel, Chou-Pong Pau, Colleen S Kraft and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

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  12. Bacterial Vaginosis: Current Diagnostic Avenues and Future Opportunities.Frontiers in cellular and infection microbiology · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Renee Donahue CarlsonDepartment of Medicine, Division of Infectious Diseases, School of Medicine.
Anandi N ShethDepartment of Medicine, Division of Infectious Diseases, School of Medicine.
Timothy D ReadDepartment of Medicine, Division of Infectious Diseases, School of Medicine.
Michael B FrischDepartment of Medicine, Division of Infectious Diseases, School of Medicine.
C Christina MehtaDepartment of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University.
Amy MartinLaboratory Branch, Division of HIV/AIDS Prevention, Centers for Disease Control and Prevention.
Richard E HaalandLaboratory Branch, Division of HIV/AIDS Prevention, Centers for Disease Control and Prevention.
Anar S PatelDepartment of Medicine, Division of Infectious Diseases, School of Medicine.
Chou-Pong PauLaboratory Branch, Division of HIV/AIDS Prevention, Centers for Disease Control and Prevention.
Colleen S KraftDepartment of Medicine, Division of Infectious Diseases, School of Medicine.
Igho OfotokunDepartment of Medicine, Division of Infectious Diseases, School of Medicine.
Emory University · USInstitute of Human Genetics · PL

Funding

Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Carlos del Rio · 2002 to 2026
$74.0M
Atlanta Clinical and Translational Science Institute (ACTSI) RenewalUL1TR000454 · NCATS · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2012 to 2016
$25.8M
Characterization and modulation of mucosal immunity for HIV prevention in womenK23AI114407 · NIAID · EMORY UNIVERSITY · PI SHETH, ANANDI NAYAN · 2014 to 2018
$898k
Genomics-based prediction of antibiotic failure in S. aureus infectionsR21AI121860 · NIAID · EMORY UNIVERSITY · PI READ, TIMOTHY D., SATOLA, SARAH W · 2016 to 2017
$429k
NCATS NIH HHS UL1 TR000454NIAID NIH HHS K23 AI114407NIAID NIH HHS P30 AI050409NIAID NIH HHS R21 AI121860
6 · The paper itself

Abstract

Background: The female genital tract (FGT) microbiome may affect vaginal pH and other factors that influence drug movement into the vagina. We examined the relationship between the microbiome and antiretroviral concentrations in the FGT. Methods: Over one menstrual cycle, 20 human immunodeficiency virus (HIV)-infected women virologically suppressed on tenofovir (TFV) disoproxil fumarate/emtricitabine and ritonavir-boosted atazanavir (ATV) underwent serial paired cervicovaginal and plasma sampling for antiretroviral concentrations using high-performance liquid chromatography-tandem mass spectrometry. Analysis of 16S ribosomal RNA gene sequencing of cervicovaginal lavage clustered each participant visit into a unique microbiome community type (mCT). Results: Participants were predominantly African American (95%), with a median age of 38 years. Cervicovaginal lavage sequencing (n = 109) resulted in a low-diversity mCT dominated by Lactobacillus (n = 40), and intermediate-diversity (n = 28) and high-diversity (n = 41) mCTs with abundance of anaerobic taxa. In multivariable models, geometric mean FGT:plasma ratios varied significantly by mCT for all 3 drugs. For both ATV and TFV, FGT:plasma was significantly lower in participant visits with high- and low-diversity mCT groups (all P < .02). For emtricitabine, FGT:plasma was significantly lower in participant visits with low- vs intermediate-diversity mCT groups (P = .002). Conclusions: Certain FGT mCTs are associated with decreased FGT antiretroviral concentrations. These findings are relevant for optimizing antiretrovirals used for biomedical HIV prevention in women.

Indexed as

MicrobiotaAdenineAdolescentAdultAnti-Retroviral AgentsCohort StudiesDeoxycytidineEmtricitabineFemaleFumaratesGenitalia, FemaleHIV InfectionsHumansMiddle AgedOrganophosphonatesProspective StudiesAdenineAnti-Retroviral AgentsDeoxycytidineEmtricitabineFumaratesOrganophosphonatesTenofovirfemale genital tractHIV preventionmicrobiomepharmacology

Identifiers

PMID29029138
PMCPMC5853913
OpenAlexW2761951231

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.