Evidence map›Paper›PMID 29029047›Full record

ArticleFEMS microbiology ecology2017

Community structure of rare methanogenic archaea: insight from a single functional group.

Sizhong Yang, Matthias Winkel, Dirk Wagner, Susanne Liebner

Open access · hybridAbstract read
In one paragraph

Article in FEMS microbiology ecology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Insights on Microbial Communities Inhabiting Non-Volcanic Hot Springs.International journal of molecular sciences · 2022
    Article
  5. Article
  6. Dissimilatory nitrate reduction and functional genes in two subtropical rivers, China.Environmental science and pollution research international · 2021
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Sizhong YangGFZ German Research Center for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, 14473 Potsdam, Germany.
Matthias WinkelGFZ German Research Center for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, 14473 Potsdam, Germany.
Dirk WagnerGFZ German Research Center for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, 14473 Potsdam, Germany.
Susanne LiebnerGFZ German Research Center for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, 14473 Potsdam, Germany.
Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rare biosphere, the low abundant microbial populations, is suggested to be a conserved way of microbial life. Here we conducted a molecular survey of rare methanogenic archaea in the environment targeting the mcrA gene in order to test if general concepts associated with the structure of the rare bacterial biosphere also apply to single functional groups. Similar to what is known about rare bacterial communities, the contribution of rare methanogens to the alpha diversity is much larger than to Bray-Curtis measures. Moreover, a similar core group of methanogens harbored by the abundant and rare communities suggests similar sources and environmental controls of both groups. Among the communities of different levels of rarity, the conditionally rare methanogenic taxa largely account for the overall community dynamics of the rare biosphere and likely enter the dominant community under favorable environmental conditions. In addition, we observed a positive correlation between the alpha diversity and the production of methane when the rare taxa were taken into account. This supports the concept that increasing microbial biodiversity enhances ecological function. The composition and environmental associations of the rare methanogenic biosphere allow us to conclude that rarity is a conserved way also for single functional groups.

Indexed as

BiodiversityBacteriaDNA Restriction EnzymesEuryarchaeotaMethanePhylogenyRNA, Ribosomal, 16SSoil MicrobiologyDNA Restriction Enzymesendodeoxyribonuclease McrAMethaneRNA, Ribosomal, 16Sbeta diversityconditionally rare taxamethanogenic archaearare biospherespecies richness

Identifiers

PMID29029047
PMCPMC5812523
OpenAlexW2774444309

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.